Import pytables_3.10.1-2+rpi1.debian.tar.xz
authorPeter Michael Green <plugwash@raspbian.org>
Tue, 7 Jan 2025 04:36:08 +0000 (04:36 +0000)
committerPeter Michael Green <plugwash@raspbian.org>
Tue, 7 Jan 2025 04:36:08 +0000 (04:36 +0000)
[dgit import tarball pytables 3.10.1-2+rpi1 pytables_3.10.1-2+rpi1.debian.tar.xz]

35 files changed:
.gitlab-ci.yml [new file with mode: 0644]
README.Debian [new file with mode: 0644]
README.source [new file with mode: 0644]
changelog [new file with mode: 0644]
clean [new file with mode: 0644]
control [new file with mode: 0644]
copyright [new file with mode: 0644]
gbp.conf [new file with mode: 0644]
patches/0001-use-dynamic-lib.patch [new file with mode: 0644]
patches/0002-use-local-mathjax.patch [new file with mode: 0644]
patches/0003-remove-gtags.patch [new file with mode: 0644]
patches/0004-Skip-index-backcompat-tests-on-bingendian.patch [new file with mode: 0644]
patches/0005-No-python-blosc2.patch [new file with mode: 0644]
patches/0006-Build-with-numpy-1.x.patch [new file with mode: 0644]
patches/series [new file with mode: 0644]
pt2to3.1 [new file with mode: 0644]
ptdump.1 [new file with mode: 0644]
ptrepack.1 [new file with mode: 0644]
pttree.1 [new file with mode: 0644]
python-tables-data.install [new file with mode: 0644]
python-tables-doc.doc-base [new file with mode: 0644]
python-tables-doc.docs [new file with mode: 0644]
python-tables-doc.examples [new file with mode: 0644]
python-tables-doc.install [new file with mode: 0644]
python-tables-doc.links [new file with mode: 0644]
python3-tables-lib.install [new file with mode: 0644]
python3-tables.install [new file with mode: 0644]
python3-tables.links [new file with mode: 0644]
python3-tables.lintian-overrides [new file with mode: 0644]
python3-tables.manpages [new file with mode: 0644]
rules [new file with mode: 0755]
source/format [new file with mode: 0644]
source/lintian-overrides [new file with mode: 0644]
upstream/metadata [new file with mode: 0644]
watch [new file with mode: 0644]

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
new file mode 100644 (file)
index 0000000..d3e0cea
--- /dev/null
@@ -0,0 +1,6 @@
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/recipes/debian.yml
+
+variables:
+  SALSA_CI_ENABLE_BUILD_PACKAGE_TWICE: 1
+  SALSA_CI_DISABLE_CROSSBUILD_ARM64: 1
diff --git a/README.Debian b/README.Debian
new file mode 100644 (file)
index 0000000..d5fdafd
--- /dev/null
@@ -0,0 +1,8 @@
+PyTables for Debian
+-------------------
+
+- The user's manual and the examples are in python-tables-doc
+  package. For the new additions on this release, see changelog.gz.
+
+ -- Francesc Altet <faltet@carabos.com>, Fri, 15 Jul 2005 18:26:51 +0200
+
diff --git a/README.source b/README.source
new file mode 100644 (file)
index 0000000..bccd59e
--- /dev/null
@@ -0,0 +1,42 @@
+README.source
+-------------
+
+The PyTables project provides two kinds of source packages:
+
+* the "official" source tarball also includes the pre-built HTML and PDF
+  documentation and is the available at
+
+  http://sourceforge.net/projects/pytables/files/pytables/
+
+  or
+
+  http://pypi.python.org/pypi/tables
+
+* the "pure source" distribution, instead, only includes sources for the
+  python package and extensions and for documentation (sphinx [1] based
+  documentation in reStructuredText format).
+  The "pure source" distribution is only available on GitHub and it is
+  generated from the source code repository tags:
+
+  https://github.com/PyTables/PyTables/releases
+
+The debian package for PyTables uses the "pure source" distribution in order
+to make it easier to manage stuffs related to sphinx [1] documentation
+management.
+
+The PyTables source tree includes an internal copy of c-blosc [2] and
+(starting from version 3.1) a copy of the zlib [3], lz4 [4] and snappy [5]
+compression libraries.
+Apart for c-blosc, for which no debian package is available at the moment,
+the debian package for PyTables does not use the internal copy of the
+compressors. It links the system version of that libraries.
+
+
+[1] http://sphinx-doc.org
+[2] http://blosc.org
+[3] http://www.zlib.net
+[4] http://code.google.com/p/lz4
+[5] http://code.google.com/p/snappy
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Wed, 05 Mar 2014 23:49:28 +0100
+
diff --git a/changelog b/changelog
new file mode 100644 (file)
index 0000000..044b561
--- /dev/null
+++ b/changelog
@@ -0,0 +1,975 @@
+pytables (3.10.1-2+rpi1) trixie-staging; urgency=medium
+
+  * Disable testsuite.
+
+ -- Peter Michael Green <plugwash@raspbian.org>  Tue, 07 Jan 2025 04:36:08 +0000
+
+pytables (3.10.1-2) unstable; urgency=medium
+
+  * Drop support for mips64el (see #1091836).
+  * Update dates in d/copyright.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Thu, 02 Jan 2025 19:03:09 +0000
+
+pytables (3.10.1-1) unstable; urgency=medium
+
+  * New upstream release.
+  * debian/patches:
+    - Refresh all patches.
+    - New 0006-Build-with-numpy-1.x.patch.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sun, 18 Aug 2024 10:04:32 +0000
+
+pytables (3.10.0-1) unstable; urgency=medium
+
+  * New upstream release.
+  * debian/patches:
+    - Refresh all patches.
+  * Standards version bumped to 4.7.0, no changes.
+  * debian/control:
+    - Add dependency on python3-typing-extension.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Wed, 14 Aug 2024 13:54:14 +0000
+
+pytables (3.9.2-2) unstable; urgency=medium
+
+  * debian/patches:
+    - New 0005-No-python-blosc2.patch (Closes: #1065120).
+  * Update dates in d/copyright.
+  * Set upstream metadata fields: Security-Contact.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sun, 07 Apr 2024 06:58:48 +0000
+
+pytables (3.9.2-1) unstable; urgency=medium
+
+  * New upstream release.
+  * debian/patches:
+    - Drop pathces applied upstream:
+      0005-Fix-compatibility-with-numpy-1.22.patch,
+      0006-Compatibility-with-sphinx-7.1.patch,
+      0007-Compatibility-with-numexpr-v2.8.5.patch,
+      0008-Python-3.12-compat.patch,
+      and 0009-Numpy-v1.25-compat.patch.
+    - Refresh remaining patches.
+  * debian/control:
+    - Build-depend on c-blosc2-dev.
+    - Add dependency on python3-cpuinfo.
+    - Versioned dependency on numexpt (>= 2.8.7).
+  * Update d/copyright.
+  * Update d/python3-tables.links.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 30 Dec 2023 18:26:59 +0000
+
+pytables (3.7.0-10) unstable; urgency=medium
+
+  * debian/patches:
+    - New 0008-Python-3.12-compat.patch and 0009-Numpy-v1.25-compat.patch.
+      Closes: #1055579.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sun, 12 Nov 2023 09:40:05 +0000
+
+pytables (3.7.0-9) unstable; urgency=medium
+
+  * debian/rules:
+    - Clean .pyc files after documentation build (Closes: #1050176).
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Mon, 21 Aug 2023 19:57:21 +0000
+
+pytables (3.7.0-8) unstable; urgency=medium
+
+  * debian/patches:
+    - Update d/patches/0007-Compatibility-with-numexpr-v2.8.5.patch
+      to make it comatible again with numexpr < v2.8.5.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Fri, 18 Aug 2023 13:16:16 +0000
+
+pytables (3.7.0-7) unstable; urgency=medium
+
+  * debian/patches:
+    - New d/patches/0007-Compatibility-with-numexpr-v2.8.5.patch.
+  * debian/control:
+    - Use the <!nodoc> marker.
+    - Update package description.
+  * Switch to dh-sequence-*.
+  * Switch to autopkgtest-pkg-pybuild and drop the no longer
+    needed d/tests folder.
+  * New d/clean file.
+  * debian/rules:
+    - Switch to execute_after_* targets.
+    - Improve/simplify doc build.
+  * Update d/python3-tables.lintian-overrides.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Thu, 17 Aug 2023 17:30:13 +0000
+
+pytables (3.7.0-6) unstable; urgency=medium
+
+  * Dump debhelper compat to 13.
+  * Standards version bumped to 4.6.2 (no changes).
+  * debian/patches:
+    - new 0006-Compatibility-with-sphinx-7.1.patch (Closes: #1042691).
+  * Use dh-sequence-numpy3.
+  * No longer build PDF documentation.
+  * Update dates in d/copyright.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 05 Aug 2023 14:58:29 +0000
+
+pytables (3.7.0-5) unstable; urgency=medium
+
+  * debian/patches:
+    - fix compatibility with numpy >= 1.22 (Closes: #1026604).
+      See also https://github.com/PyTables/PyTables/issues/934.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Tue, 20 Dec 2022 21:15:54 +0000
+
+pytables (3.7.0-4) unstable; urgency=medium
+
+  * debian/copyright:
+    - Fix formatting
+    - Update copyright date
+  * debian/tests:
+    - autopkgtests all supported Python versions.
+  * Fix lintian overrides.
+  * debian/control:
+    - add build-dependency on pybuild-plugin-pyproject.
+  * Standards version bumped to 4.6.1 (no changes).
+  * Update debian/*.install files.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 15 Oct 2022 10:44:26 +0000
+
+pytables (3.7.0-3) unstable; urgency=medium
+
+  * Fix documentation build (Closes: #1009459).
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Thu, 14 Apr 2022 06:39:28 +0000
+
+pytables (3.7.0-2) unstable; urgency=medium
+
+  * debian/python3-tables.links
+    - add missing link to data file.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Thu, 30 Dec 2021 11:14:17 +0000
+
+pytables (3.7.0-1) unstable; urgency=medium
+
+  * New upstream release.
+  * Cleanup of d/python3-tables.lintian-overrides.
+  * Update d/copyright.
+  * debian/patches:
+    - drop 0002-Never-use-the-msse2-flag-explicitly.patch,
+      0006-Fix-pttree.patch, 0007-Fix-syntax-warnings.patch,
+      0008-Fix-the-interpreter-name-in-examples.patch,
+      0009-Fix-unittests-on-vlarrays.patch,
+      0010-Use-lowercase-float-int-as-numpy-dtype.patch,
+      0011-doctest-adjust-__init__-TypeError-formatting.patch,
+      applied upstream
+    - refresh and renumber remaining patches.
+  * debian/control:
+    - update dependencies (add python3-packaging and remove
+      python3-six).
+  * debian/rules:
+    - disable SSE2 via environment variable
+    - clean build rule
+    - improve the test rule.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Wed, 29 Dec 2021 22:51:43 +0000
+
+pytables (3.6.1-6) unstable; urgency=medium
+
+  [ Stefano Rivera ]
+  * Handle Python 3.10 in the Sphinx build, missed in 5.1.
+
+  [ Antonio Valentino ]
+  * Update d/python3-tables.lintian-overrides.
+  * Update d/copyright.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Fri, 26 Nov 2021 08:12:25 +0000
+
+pytables (3.6.1-5.1) unstable; urgency=medium
+
+  * Non-maintainer upload.
+  * Patch: Fix FTBFS with numpy >= 1.20 (Closes: #999538)
+  * Patch: Fix FTBFS with Python 3.10.
+  * Install Python 3.10 C Extensions (2-digit minor version).
+
+ -- Stefano Rivera <stefanor@debian.org>  Sat, 20 Nov 2021 23:32:58 -0400
+
+pytables (3.6.1-5) unstable; urgency=medium
+
+  * debian/control:
+    - explicitly depende on tex-gyre (fix build on mips*).
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Tue, 28 Sep 2021 06:05:13 +0000
+
+pytables (3.6.1-4) unstable; urgency=medium
+
+  * Standards version bumped to 4.6.0 (no changes).
+  * debian/control:
+    - drop unnecessary greater-than versioned dependency from
+      python-tables-doc
+    - drop unnecessary Breaks/Replaces fileds for version 3.4.2-1
+      (oldstable has 3.4.4-2)
+  * debian/patches:
+    - new 0009-Fix-unittests-on-vlarrays.patch, see
+      0009-Fix-unittests-on-vlarrays.patch.
+  * Drop python3-tables-dbg (Closes: #994343).
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sun, 26 Sep 2021 08:08:53 +0000
+
+pytables (3.6.1-3) unstable; urgency=medium
+
+  * Add lintian-overrides for maintainer-manual-page.
+    Manual pages already forwarded upstream.
+  * Add lintian-overrides for breakout-link.
+  * Update mismatching lintian overrides.
+  * Add Forwarded field to all patches.
+  * Standards-Version bumped to 4.5.1, no change needed.
+  * Update watch file format version to 4.
+  * debian/patches:
+    - new 0008-Fix-the-interpreter-name-in-examples.patch
+  * Add .gitlab-ci.yml.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Tue, 08 Dec 2020 09:02:17 +0000
+
+pytables (3.6.1-2) unstable; urgency=medium
+
+  * Add links to new data (fix CI tests).
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 04 Jan 2020 08:59:06 +0000
+
+pytables (3.6.1-1) unstable; urgency=medium
+
+  * New upstream release.
+  * Drop manpage for nc2h5. the tool has been already removed some
+    time ago.
+  * debian/patches:
+    - drop 0005-Drop-mock-for-requirements.txt.patch and
+      0007-Compat-with-Python-3.8.patch: applied upstream
+    - refresh and renumber remaining patches
+    - new 0006-Fix-pttree.patch (Closes: #941954)
+    - new 0007-Fix-syntax-warnings.patch (Closes: #945282)
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 21 Dec 2019 17:29:37 +0000
+
+pytables (3.5.2-5) unstable; urgency=medium
+
+  * Team upload.
+  * Drop python2 support; Closes: #937554
+
+ -- Sandro Tosi <morph@debian.org>  Tue, 17 Dec 2019 16:17:38 -0500
+
+pytables (3.5.2-4) unstable; urgency=medium
+
+  * Update standards version to 4.4.1, no changes needed.
+  * Remove obsolete fields Name from debian/upstream/metadata.
+  * Fix day-of-week for changelog entries 2.1.2-3, 0.7.2-2.
+  * debian/patches:
+    - new 0007-Compat-with-Python-3.8.patch
+  * debian/control:
+    - explicitly set Rules-Requires-Root: no
+  * Replace deprecated ADTTMP with AUTOPKGTEST_TMP in debian/tests
+    scripts.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Thu, 21 Nov 2019 20:06:22 +0000
+
+pytables (3.5.2-3) unstable; urgency=medium
+
+  * debian/rules:
+    - improve clean target
+    - ensure reproducible builds
+    - fix sphinx build command
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Fri, 16 Aug 2019 17:53:28 +0000
+
+pytables (3.5.2-2) unstable; urgency=medium
+
+  * debian/control:
+    - replace the deprecated build dependency texlive-generic-extra,
+      with texlive-plain-generic (Closes: #933279)
+    - sort dependency lists
+  * debian/patches:
+    - new 0006-Skip-index-backcompat-tests-on-bingendian.patch
+  * drop debian/compat file, and depend on debelper-compat.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 03 Aug 2019 16:24:07 +0000
+
+pytables (3.5.2-1) unstable; urgency=medium
+
+  * New upstream release.
+  * debian/control:
+    - standard version bumped to 4.4.0, no change
+    - remove unnecessary greater-than versioned dependency for liblz4-dev
+  * debian/rules:
+    - drop -pie from hardening flags
+  * Use secure URI in Homepage field.
+  * Clean links to duplicated files in debian/python-tables-doc.links
+  * debian/patches:
+    - drop 0005-Comaptibility-with-numpy-1.16.patch and
+      debian/patches/0006-Fix-LZO2-detection.patch: applied upstream
+    - new 0005-Drop-mock-for-requirements.txt.patch
+    - refresh remaining patches
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sun, 14 Jul 2019 09:32:15 +0000
+
+pytables (3.4.4-2) unstable; urgency=medium
+
+  * Team upload.
+  * Standard version bumped to 4.3.0, no change.
+  * debian/patches:
+    - new 0005-Comaptibility-with-numpy-1.16.patch:
+      fixes an issue with not writeable buffers.
+      Closes: #917666.
+    - new 0006-Fix-LZO2-detection.patch
+  * debian/control:
+    - re-order dependencies
+  * Add gbp.conf file.
+  * Switch to pybuild.
+  * Set compat to 12.
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Wed, 02 Jan 2019 09:48:48 +0000
+
+pytables (3.4.4-1) unstable; urgency=medium
+
+  * New upstream release.
+  * debian/patches
+    - drop 0005-Compatibility-with-NumPy-1.14.3.patch.
+      Applied upstream.
+    - refresh remaining pathces.
+  * debian/changelog
+    - strip trailing spaces
+    - update copyright dates
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 16 Jun 2018 10:53:16 +0000
+
+pytables (3.4.3-2) unstable; urgency=medium
+
+  * debian/patches
+    - new 0005-Compatibility-with-NumPy-1.14.3.patch (Closes: #898577)
+  * debian control
+    - drop ancient X-Python-Version fields
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Mon, 14 May 2018 22:21:42 +0000
+
+pytables (3.4.3-1) unstable; urgency=medium
+
+  * New upstream release.
+  * Standard version bump to v4.1.4 (no change)
+  * Add upstream metadata.
+  * Updated debian/copyright file.
+  * debian/control
+    - update Vcs-* fields
+  * debian/patches
+    - drop 0004-unicode-charecter-for-latexpdf.patch, applied upstream
+    - drop 0005-usepackage-threeparttable.patch, applied upstream
+    - drop debian/patches/0006-Use-mock-form-stdlib.patch, applied upstream
+    - new 0004-remove-gtags.patch to avoid privacy-breach-generic
+    - refresh all remaining patches
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sun, 22 Apr 2018 16:48:11 +0000
+
+pytables (3.4.2-4) unstable; urgency=medium
+
+  * Switch to pybuild
+  * debian/control
+    - python-tables-doc (>= 3.4.2-3) tries to overwrite files in older
+      python-tables.
+      Set the proper package dependency relations (Closes: #891023).
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sun, 25 Feb 2018 12:07:35 +0000
+
+pytables (3.4.2-3) unstable; urgency=medium
+
+  * Standard version bumped to v4.1.3 (no changes)
+  * Set compat to 11
+  * Update lintian overrides
+  * Fix 0005-usepackage-threeparttable.patch (Closes: #888177)
+  * debian/control
+    - suggest python(3)-netcdf4 instead of python-netcdf
+    - drop build dependency from python3-mock (Closes: #876841)
+    - update package description (Closes: #664441)
+  * Do not install duplicate files
+  * python-tables-doc depends on libjs-mathjax (Closes: #877277)
+  * debian/patches
+    - refresh all patches
+    - new 0006-Use-mock-form-stdlib.patch
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Fri, 02 Feb 2018 07:39:49 +0000
+
+pytables (3.4.2-2) unstable; urgency=medium
+
+  * Standard version bumped to v4.1.1 (extra --> optional)
+  * debian/control
+    - declare break/replace rules: python3-tables (>= 3.4.2-1) install
+      scripts that was previously installed by python-tables
+      (Closes: #881741)
+    - remove break/replace rules for pytables << 3.0.0-3:
+      no longer necessary
+  * debian/tests/control
+    - reformat
+    - re-enable tests on python3-dbg
+  * add debian/source.lintian-overrides
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 18 Nov 2017 11:58:23 +0000
+
+pytables (3.4.2-1) unstable; urgency=medium
+
+  * New upstream release (Closes: #874362)
+  * Standard version bumped to v4.1.0 (no change)
+  * Ensure that autopkgtest scripts return the correct exit code
+    (Closes: #864395)
+  * debian/patches:
+    - drop 0003-Do-not-fetch-icons-for-external-web-sites.patch,
+      0004-fix-compatibility-with-HDF5-1.10.patch,
+      0005-Ignore-cpuinfo-on-unsupported-archs.patch and
+      0006-allow-for-long-type-in-nextafter: applied upstream
+    - refresh remainimg patches
+    - new 0003-use-local-mathjax.patch
+    - new 0004-unicode-charecter-for-latexpdf.patch
+    - new 0005-usepackage-threeparttable.patch (compatibility
+      with sphinx >= 1.6)
+  * Updated copyright file
+  * debian/control
+    - add build dependency from python(3)-sphinx-rtd-theme,
+      python(3)-ipython, python(3)-numpydoc and python-mock
+    - add dependency from libjs-mathjax and python(3)-mock
+    - depend on python3-sphinx instead of pyhton-sphinx
+    - build-depend on latexmk that is required bt sphinx >= 1.6
+      (Closes: #872314)
+    - remove un-necessary "Testsuite: autopkgtest"
+  * Install scripts (and related manpages) for the python3 version
+    of the package
+  * debian/rules
+    - no longer use dpkg-parsechangelog to determine the current
+      package timestamp
+    - avoid duplicate files in the doc
+    - improve clean target
+  * debian/source/lintian-overrides
+    - new lintian overrides for library-package-name-for-application
+      and application-in-library-section
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 23 Sep 2017 11:56:40 +0000
+
+pytables (3.3.0-5) unstable; urgency=medium
+
+  * debian/rules
+    - typo in BUILD_DATE
+  * debian/patches
+    - removed 0006-Disable-tests-on-bitshuffle.patch
+      It is no longer necessary after the fix of #844047 in
+      c-blosc 1.11.1+ds1-3
+    - new 0006-allow-for-long-type-in-nextafter.patch.
+      Imported from upstream  (see also
+      https://github.com/PyTables/PyTables/pull/587)
+    - new 0007-fix-base-class-order.patch to fix compatibility with
+      Python v2.7.13.
+      See also https://github.com/PyTables/PyTables/issues/590
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Wed, 07 Dec 2016 13:19:56 +0100
+
+pytables (3.3.0-4) unstable; urgency=medium
+
+  * debian/patches
+    - new 0006-Disable-tests-on-bitdhuffle.patch: temporarily disable
+      tests on the blosc bitshuffle filter due to bug #843040
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Thu, 03 Nov 2016 18:13:31 +0000
+
+pytables (3.3.0-3) unstable; urgency=medium
+
+  * debian/patches
+    - improved 0005-Ignore-cpuinfo-on-unsupported-archs.patch to ignore
+      any kind of error from cpuinfo
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Tue, 01 Nov 2016 21:35:06 +0000
+
+pytables (3.3.0-2) unstable; urgency=medium
+
+  * debian/patches
+    - new 0005-Ignore-cpuinfo-on-unsupported-archs.patch:
+      fix build on non x86 platforms
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Tue, 01 Nov 2016 08:10:06 +0000
+
+pytables (3.3.0-1) unstable; urgency=medium
+
+  * New upstream release
+  * Use packaged blosc library
+  * debian/watch
+    - add compatibility to the new tagging schema
+  * debian/patches
+    - drop 0005-fix-index-inheritance-order.patch and
+      0006-fix-typo-in-hdf5extension.pyx.patch: applied upstream
+    - new 0005-fix-compatibility-with-HDF5-1.10.patch
+    - drop 0002-Use-system-compression-libs.patch: not necessary
+    - refresh all patches
+  * debian/copyright
+    - add copyright for zsrd source
+  * debian/rules
+    - set hardening flags
+  * debian/control
+    - cleanup and warning suppression
+    - add build dependency from python?-six
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Mon, 31 Oct 2016 14:34:18 +0000
+
+pytables (3.2.2-3) unstable; urgency=medium
+  * debian/control
+    - standard version bumped to 3.9.8 (no change required)
+    - fix build dependencies: add missing texlive-generic-extra
+      (Closes: #829077)
+  * debian/copyright
+    - fix DEP-5 url
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 02 Jul 2016 09:52:51 +0000
+
+pytables (3.2.2-2) unstable; urgency=medium
+
+  * debian/patches
+    - new 0005-fix-index-inheritance-order.patch to fix the
+      inheritance order of the Index class (Closes: #818501)
+  * debian/copyright
+    - use unambiguous license naae (expat nstead of MIT)
+    - fix LZ4 source code URL
+  * debian/control
+    - standard version bumped to 3.9.7 (no change required)
+    - fix VCS URL
+    - remove not necessary version numbers from build dependency
+      specification
+  * debian/patches
+    - improved formatting of 0003-Never-use-the-msse2-flag-explicitly.patch
+  * Fix typos in manpages
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sun, 27 Mar 2016 08:22:15 +0000
+
+pytables (3.2.2-1) unstable; urgency=medium
+
+  * New upstream release (Closes: #800466)
+  * debian/patches:
+    - drop 0005-Fix-setitem-return-value.patch (applied upstream)
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 03 Oct 2015 16:33:36 +0000
+
+pytables (3.2.1-1) unstable; urgency=medium
+
+  * New upstream version
+  * Fix debian/watch file
+  * Update copyright file
+  * Update authors in debian/python-tables-doc.doc-base
+  * debian/control
+    - updated dependencies versions
+    - added build-dependeny from setuptools
+    - stamdards version bumped to 3.9.6 (no change)
+    - update vcs URLs to the new recommended format
+    - remove deprecated XS-Testsuite field
+    - general update and reformatting (suggested by cme fix dpkg-control)
+    - run tests with utf-8 locale (patch from Barry Warsaw <barry@ubuntu.com>)
+  * debian/rules
+    - make build reproducible
+  * debian/patches
+    - refresh all patches
+    - drop 0003-Better-control-of-verbosity-in-unittests.patch
+      (applied upstream)
+    - drop 0006-fix-an-import-issue-with-cython-newer-than-0.20.2.patch
+      (applied upstream)
+    - drop 0007-Temporay-desable-tests-that-use-the-lz4-conpressor.patch
+      no longer needed.
+      The issue with lz4 compressor on s39x has been fixed in lz4_0.0~r122-1.
+    - new 0005-Fix-setitem-return-value.patch patch for Python 3.5 compatibility
+      (patch from Barry Warsaw <barry@ubuntu.com>). Closes: #795333.
+  * README.txt has been renamed into README.rst upsream.
+    Updated python-pytables*.docs files.
+  * New manpage for the pttree utility
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Fri, 14 Aug 2015 19:42:08 +0000
+
+pytables (3.1.1-3) unstable; urgency=medium
+
+  * New patch:
+    0007-Temporay-desable-tests-that-use-the-lz4-conpressor.patch
+    The patch temporay desables tests that use the lz4 conpressor
+    on the s390x platform (see #757581 for more details).
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Fri, 15 Aug 2014 07:37:41 +0000
+
+pytables (3.1.1-2) unstable; urgency=medium
+
+  * Support hdf5 1.8.13 new packaging layout (Closes: #756694)
+  * debian/patches
+    - new patch that fixes an import issue with cython > 0.20.2
+  * debian/control
+    - added an explicit build dependency from dh-python
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Mon, 04 Aug 2014 21:29:17 +0000
+
+pytables (3.1.1-1) unstable; urgency=medium
+
+  * New upstream release
+  * debian/control
+    - debug package now depend on python(3)-dbg, python(3)-numpy-dbg,
+      pyhon(3)-numexpr-dbg instead of recommending them
+      (Closes: #742557)
+    - use versioned dependency for lzo (>= 0.0~r114) since one of the
+      symbols used in blosc is missing in earlier versions
+  * debian/patches
+    - new patch (0003-Better-control-of-verbosity-in-unittests.patch)
+      for better control of verbosity in unittests
+    - new patch 0005-Do-not-fetch-icons-for-external-web-sites.patch
+      to avoid fetching data from external web sites in html pages of
+      the doc
+    - the 0003-Only-use-msse2-flag-on-x86_64.patch has been updated
+      after the upstream changes and renamed into
+      0004-Never-use-the-msse2-flag-explicitly.patch
+    - all remaining patches has been refreshed
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 12 Apr 2014 19:02:49 +0000
+
+pytables (3.1.0-2) unstable; urgency=medium
+
+  * Improved the debian/README.source file (added a note about the
+    external compression libraries included in the source tree)
+  * Only use the -msse2 flag on x86_64 machines
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Wed, 05 Mar 2014 22:51:16 +0000
+
+pytables (3.1.0-1) unstable; urgency=low
+
+  * New upstream release (Closes: #734298)
+  * Standard version bumped to 3.9.5 (no changes)
+  * New python(3)-tables-lib packages.
+    The old python(3)-tables packages have been split into
+    python(3)-tables (containing common code for all platforms) and
+    python(3)-tables-lib (containing only platform specific extensions).
+  * New python-tables-data package including all data files used for
+    unit testing
+  * Added autopkgtests running testsuite
+  * debian/patches
+    - removed 0001-Fix-detection-of-platforms-supporting-blosc.patch
+      (applied upstream)
+    - removed 0003-disable-extended-float-support.patch no more
+      necessary
+    - remaining patches have been refreshed
+    - new patch (0002-Use-system-compression-libs.patch) to use
+      system compression libraries instead of internal copies
+  * debian/control
+    - added build dependencies from liblz4-dev and snappy-dev
+  * temporary disabled tests for python3.x-dbg
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sun, 02 Mar 2014 15:47:11 +0000
+
+pytables (3.0.0-2) unstable; urgency=low
+
+  * Explicitly specify the minimum numexpr version in the binary
+    package dependency line
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 21 Sep 2013 17:48:09 +0000
+
+pytables (3.0.0-1) experimental; urgency=low
+
+  * New upstream release
+  * Fix PDF doc installation after upstream changes
+  * Added a man page for the new pt2pt3 command line tool
+  * Build-Depend on numexpr >= 2.1
+  * Minimum Python version is now 2.6
+  * New packages for Python 3
+  * debian/patches:
+    - Refresh all patches
+    - Drop 0002-Fix-detection-od-platforms-supporting-blosc.patch
+      (applied upstream)
+    - New 0002-use-dynamic-lib.patch (fixes an issue with liblzo2.so
+      detection)
+    - New patch for disabling extended float support (workaround for an
+      upstream bug of HDF5 with gcc-4.8)
+  * Fixed the license for win32/pthread.* in the copyright file
+    See also https://code.google.com/p/numexpr/issues/detail?id=109#c5
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 07 Sep 2013 17:24:24 +0000
+
+pytables (2.4.0-4) unstable; urgency=low
+
+  * Fix the override_dh_sphinxdoc rule to avoid failures when the -doc
+    package is not built
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Mon, 24 Jun 2013 20:20:45 +0000
+
+pytables (2.4.0-3) unstable; urgency=low
+
+  * Added build-dependency from jquery-cookie and updated debian/rules
+    to avoid embedded javascript
+  * New patch: fix tests of nested record reperesentation on big-endian
+    machines.  Backport of upstream fix for gh-237 (see also
+    https://github.com/PyTables/PyTables/issues/237).
+  * New patch: fix detection od platforms supporting blosc
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sun, 23 Jun 2013 14:14:23 +0000
+
+pytables (2.4.0-2) unstable; urgency=low
+
+  * Added vitables as suggested package (Closes: #702228)
+  * Updated copyright file
+  * Standard version bumped to 3.9.4 (no changes)
+  * Removed obsolete DM-Upload-Allowed field from the control file
+  * Enabled automatic testing for dbg packages
+  * Keep the original name of the upstream changelog
+  * Use canonical URI for VCS-* fields
+  * Fixed unnecessarily versioned build dependencies (silence cme warnings)
+  * Uploading PyTables 2.4 to unstable also fixes a small incompatibility
+    with numpy >= 1.7 (Closes: #713085)
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sun, 23 Jun 2013 13:25:28 +0000
+
+pytables (2.4.0-1) experimental; urgency=low
+
+  [ Antonio Valentino ]
+  * New upstream release (Closes: #698318, #605180)
+  * Improved watch file
+  * Removed all patches (applied upstream)
+  * Updated build dependencies
+  * Set compat to 9
+  * Updated copyright file
+
+ -- Yaroslav Halchenko <debian@onerussian.com>  Mon, 28 Jan 2013 10:02:57 -0500
+
+pytables (2.3.1-3) unstable; urgency=low
+
+  [ Antonio Valentino ]
+  * Set Vcs-* fields in the control file (Closes: #657766)
+  * Provide -dbg package (Closes: #399332)
+  * Override dh_install instead of dh_auto_install
+  * Honor nodoc and noopt DEB_BUILD_OPTIONS (Closes: #660001)
+  * Updated copyright format URL
+  * Standard version bumped to 3.9.3 (no changes)
+  * Patch fix_unaligned_mem_access to avoid errors related to unaligned
+    memory access on platforms like ARM, etc (Closes: #661287).
+    The patch has been backported from upstream and originally submtted
+    by Julian Taylor
+
+  [ Yaroslav Halchenko ]
+  * Patch up_skip_multiprocessing_test_on_gnu to disable test on Hurd and
+    kFreeBSD systems -- multiprocessing locking seems to be N/A
+
+  [ Julian Taylor ]
+  * fix_library_detection.patch:
+    fixes detection of multiarched bzip and lzo2 (Closes: #657789)
+  * rules: update clean target to remove some remnant files
+  * disable_blosc.patch:
+    disable blosc on armel, armhf, sparc and mipsel
+    not functional due to unaligned memory accesses
+    (Closes: #661287, #661286)
+  * make testsuite output verbose
+
+ -- Yaroslav Halchenko <debian@onerussian.com>  Mon, 05 Mar 2012 16:32:52 -0500
+
+pytables (2.3.1-2) unstable; urgency=low
+
+  * Avoid unnecessary cythonization during clean
+  * Ensure that build fails in case of test failure
+  * Explicitly set PYTHONPATH before running tests
+  * Call dh_numpy to generate proper dependency on numpy
+    (Closes: #657089)
+
+ -- Antonio Valentino <antonio.valentino@tiscali.it>  Sat, 28 Jan 2012 12:39:25 +0100
+
+pytables (2.3.1-1) unstable; urgency=low
+
+  [ Antonio Valentino ]
+  * New upstream release (Closes: #641485)
+  * Watch file updated to point tho the new download site
+  * Copyright file converted to DEP5 format
+  * Removed debian/pycompat file: no more needed
+  * Switch to dpkg-source 3.0 (quilt) format
+  * Switch to dh_python2 (Closes: #616988)
+  * Now use debhelper 8 and the dh sequencer in the debian/rules file
+  * Standard version bumped to 3.9.2
+  * Build depend from numexpr, cython, pythn-sphinx and texlive-latex-*
+  * No more play with gzip in debian/rules (Closes: #551392)
+  * The package is now maintained under the unbrella of debian-science
+  * Added a debian/README.source file
+  * Enabled automatic testing
+  * Build dependency from the HDF5 library updated to libhdf5-dev
+    (HDF5 transition)
+
+  [ Yaroslav Halchenko ]
+  * Sponsored the upload
+
+ -- Yaroslav Halchenko <debian@onerussian.com>  Sun, 22 Jan 2012 22:18:32 -0500
+
+pytables (2.1.2-3.1) unstable; urgency=low
+
+  * Non-maintainer upload.
+  * Build-Depend on versioned python-numpy (>= 1:1.4.1-4~); fixes
+    incompatiblity with python-numpy (Closes: #589669)
+  * debian/rules: add call to dh_numpy to generate stricter versioned
+    depends on python-numpy (Closes: #590761)
+
+ -- Varun Hiremath <varun@debian.org>  Fri, 30 Jul 2010 23:58:31 -0400
+
+pytables (2.1.2-3) unstable; urgency=low
+
+  * Improve the long discription of python-tables-doc (closes: #551391)
+  * Remove the gzip of man1 in rules (close: #551392)
+  * Re-fix the build error with Python-2.6 (closes: #547875)
+
+ -- Wen Heping <wenheping@gmail.com>  Thu, 22 Oct 2009 23:10:23 +0100
+
+pytables (2.1.2-2) unstable; urgency=low
+
+  * Fix the build error with Python-2.6 (closes: #547875)
+
+ -- Wen Heping <wenheping@gmail.com>  Wed, 14 Oct 2009 23:10:23 +0100
+
+pytables (2.1.2-1) unstable; urgency=low
+
+  * New upstream release.
+  * Wen Heping adopt package (closes: #544895)
+  * Add a watch file
+  * Change the standards version to 3.8.3
+
+ -- Wen Heping <wenheping@gmail.com>  Fri, 09 Oct 2009 18:15:39 +0100
+
+pytables (2.0.3-1) unstable; urgency=low
+
+  * New upstream release.
+
+ -- Francesc Altet <faltet@carabos.com>  Tue, 18 Mar 2008 18:15:39 +0100
+
+pytables (2.0.2-1) unstable; urgency=low
+
+  * New upstream release.
+
+ -- Francesc Altet <faltet@carabos.com>  Tue, 27 Nov 2007 19:54:25 +0100
+
+pytables (2.0.1-1) unstable; urgency=low
+
+  * New upstream release.
+
+ -- Francesc Altet <faltet@carabos.com>  Wed, 19 Sep 2007 13:21:33 +0200
+
+pytables (2.0-1) unstable; urgency=low
+
+  * New upstream release. This no longer depends on numarray (closes: #423797)
+  * Incorporates patch from Didrik Pinte (closes: #431686)
+  * Python 2.5 packages are already available (closes: #391939)
+
+ -- Francesc Altet <faltet@carabos.com>  Thu, 05 Jul 2007 12:08:45 +0200
+
+pytables (1.3.2-2) unstable; urgency=low
+
+    * Fixed call to pyversions in debian/rules which failed on recent versions
+      of pyversions
+    * Fixed clean rule in debian/rules which left the stamp files behind
+    * Acknowledge NMU
+    * Added Alexandre Fayolle to uploaders
+
+ -- Alexandre Fayolle <afayolle@debian.org>  Wed, 28 Jun 2006 10:45:03 +0200
+
+pytables (1.3.2-1) unstable; urgency=low
+
+    * New upstream release (closes: #375691)
+
+ -- Francesc Altet <faltet@carabos.com>  Tue, 27 Jun 2006 19:57:46 +0200
+
+pytables (1.3-1.1) unstable; urgency=low
+
+  * NMU
+  * Comply with the new python policy (removes python2.X-tables
+    packages) (closes: #373508)
+  * Build-Depend on python-numarray (closes: #374177)
+  * Removed versioned dependency on virtual package python2.X-numarray
+    (closes: #374799)
+
+ -- Alexandre Fayolle <afayolle@debian.org>  Wed, 21 Jun 2006 14:16:13 +0200
+
+pytables (1.3-1) unstable; urgency=low
+
+   * New upstream release. NumPy support added.
+     (Closes: #347743)
+   * Support of new HDF5 1.6.5 packages in debian.
+   * Due to the new dynamic discovery of LZO, UCL and bzip2 libraries,
+     they are not required anymore by binaries. More specifically, LZO
+     and bzip2 are Recommended:, while UCL which is being deprecated in
+     PyTables is just "Suggested:". Many thanks to Steve Langasek for
+     suggesting an automatic way to do this.
+   * Note that, although deprecated, UCL support is in, in order to
+     allow users to migrate existing files to other supported libraries
+     (Zlib, LZO or bzip2).
+
+ -- Francesc Altet <faltet@carabos.com>  Mon, 10 Apr 2006 12:08:33 +0200
+
+pytables (1.1.1-1) unstable; urgency=low
+
+   * New upstream release. Introduced nested types, enumerated types,
+     native multidimensional attributes and a new CArray object.
+     (Closes: #309018, #308795)
+   * Drop python2.2 packages.
+
+ -- Francesc Altet <faltet@carabos.com>  Wed, 14 Sep 2005 13:38:23 +0200
+
+pytables (0.9.1-2) unstable; urgency=high
+
+   * Recompiling with libucl1 instead of ucl0 (Closes: #288464)
+   * First package built for Python 2.4.
+   * First support for gcc4 (Closes: #287972)
+
+ -- Francesc Alted <falted@pytables.org>  Tue, 11 Jan 2005 17:58:58 +0100
+
+pytables (0.9.1-1) unstable; urgency=low
+
+   * New upstream release. Mainly a maintenance release.
+
+ -- Francesc Alted <falted@pytables.org>  Thu, 09 Dec 2004 17:27:04 +0100
+
+pytables (0.9-1) unstable; urgency=low
+
+   * New upstream release. Introduced indexation, support of complex numbers
+   and update of object elements.
+
+ -- Francesc Alted <falted@pytables.org>  Fri, 05 Nov 2004 18:10:58 +0100
+
+pytables (0.8.1-4) unstable; urgency=high
+
+   * Recompiled to get a proper dependency on libucl (>=1.03-1).
+     (Closes: #276164).
+
+ -- Francesc Alted <falted@pytables.org>  Thu, 14 Oct 2004 10:45:19 +0200
+
+pytables (0.8.1-3) unstable; urgency=high
+
+   * Recompiled to adapt to a numarray ABI change introduced in 1.1.
+     (Closes: #272198).
+
+ -- Francesc Alted <falted@pytables.org>  Tue, 21 Sep 2004 12:01:20 +0200
+
+pytables (0.8.1-2) unstable; urgency=high
+
+   * Added python to Build-Depends, as debhelper requires.
+     (Closes: #259501).
+
+ -- Francesc Alted <falted@pytables.org>  Thu, 15 Jul 2004 12:15:15 +0200
+
+pytables (0.8.1-1) unstable; urgency=high
+
+   * New upstream release. It is compatible with new numarray-1.0 API.
+     (Closes: #258078).
+
+ -- Francesc Alted <falted@pytables.org>  Wed, 14 Jul 2004 12:35:15 +0200
+
+pytables (0.8-1) unstable; urgency=low
+
+   * New upstream version. It has now full 64-bit support
+     (Closes: #226653).
+
+ -- Francesc Alted <falted@pytables.org>  Thu, 25 Mar 2004 13:19:15 +0100
+
+pytables (0.7.2-2) unstable; urgency=low
+
+   * Package has been rebuilt in order to use the new libhdf5-1.6.1-0
+     instead of the previous libhdf5-1.6.0-0. See #202260 and #221699
+     bug reports for more information (Closes: #221734).
+
+ -- Francesc Alted <falted@openlc.org>  Thu, 20 Nov 2003 12:00:51 +0100
+
+pytables (0.7.2-1) unstable; urgency=low
+
+  * First debian release (Closes: #213707)
+  * Sponsored by Daniel Bungert <drb@debian.org>
+
+ -- Francesc Alted <falted@openlc.org>  Wed, 08 Oct 2003 13:48:21 +0200
diff --git a/clean b/clean
new file mode 100644 (file)
index 0000000..15c040e
--- /dev/null
+++ b/clean
@@ -0,0 +1,2 @@
+*.*-info/
+tables/*.c
diff --git a/control b/control
new file mode 100644 (file)
index 0000000..97f3789
--- /dev/null
+++ b/control
@@ -0,0 +1,111 @@
+Source: pytables
+Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
+Uploaders: Antonio Valentino <antonio.valentino@tiscali.it>,
+           Yaroslav Halchenko <debian@onerussian.com>
+Section: python
+Priority: optional
+Testsuite: autopkgtest-pkg-pybuild
+Build-Depends: cython3,
+               debhelper-compat (= 13),
+               dh-python,
+               dh-sequence-numpy3,
+               dh-sequence-python3,
+               dh-sequence-sphinxdoc,
+               libblosc-dev,
+               libblosc2-dev,
+               libbz2-dev,
+               libhdf5-dev,
+               libjs-jquery-cookie <!nodoc>,
+               libjs-mathjax <!nodoc>,
+               liblz4-dev,
+               liblzo2-dev,
+               libsnappy-dev,
+               libzstd-dev,
+               pybuild-plugin-pyproject,
+               python3-all-dev,
+               python3-cpuinfo,
+               python3-ipython <!nodoc>,
+               python3-numexpr (>= 2.8.7),
+               python3-numpy,
+               python3-numpydoc <!nodoc>,
+               python3-packaging,
+               python3-sphinx <!nodoc>,
+               python3-sphinx-rtd-theme <!nodoc>,
+               python3-setuptools,
+              python3-typing-extensions,
+               zlib1g-dev
+Standards-Version: 4.7.0
+Vcs-Browser: https://salsa.debian.org/science-team/pytables
+Vcs-Git: https://salsa.debian.org/science-team/pytables.git
+Homepage: https://www.pytables.org
+Rules-Requires-Root: no
+Description: Hierarchical database for Python3 based on HDF5
+ PyTables is a package for managing hierarchical datasets and designed
+ to efficiently cope with extremely large amounts of data.
+ .
+ It is built on top of the HDF5 library and the NumPy package. It
+ features an object-oriented interface that, combined with C extensions
+ for the performance-critical parts of the code (generated using
+ Cython), makes it a fast, yet extremely easy to use tool for
+ interactively save and retrieve very large amounts of data. One
+ important feature of PyTables is that it optimizes memory and disk
+ resources so that they take much less space (between a factor 3 to 5,
+ and more if the data is compressible) than other solutions, like for
+ example, relational or object oriented databases.
+ .
+  - Compound types (records) can be used entirely from Python (i.e. it
+    is not necessary to use C for taking advantage of them).
+  - The tables are both enlargeable and compressible.
+  - I/O is buffered, so you can get very fast I/O, specially with
+    large tables.
+  - Very easy to select data through the use of iterators over the
+    rows in tables. Extended slicing is supported as well.
+  - It supports the complete set of NumPy objects.
+
+Package: python3-tables
+Architecture: all
+Depends: ${misc:Depends},
+         ${python3:Depends},
+         python3-numexpr,
+         python-tables-data (= ${source:Version}),
+         python3-tables-lib (>= ${source:Version}),
+         python3-tables-lib (<< ${source:Version}.1~)
+Suggests: python3-netcdf4,
+          python-tables-doc,
+          vitables
+Description: ${source:Synopsis}
+ ${source:Extended-Description}
+
+Package: python3-tables-lib
+Architecture: amd64 arm64 armel armhf i386 ppc64el riscv64 loong64 m68k sh4
+Depends: ${misc:Depends},
+         ${python3:Depends},
+         ${shlibs:Depends}
+Recommends: python3-tables (= ${source:Version})
+Description: ${source:Synopsis} (extension)
+ ${source:Extended-Description}
+ .
+ This package contains the extension built for the Python 3 interpreter.
+
+Package: python-tables-doc
+Architecture: all
+Section: doc
+Depends: ${misc:Depends},
+         ${sphinxdoc:Depends},
+         libjs-mathjax,
+         libjs-jquery-cookie
+Suggests: xpdf | pdf-viewer,
+          www-browser
+Description: ${source:Synopsis} (documentation)
+ ${source:Extended-Description}
+ .
+ This package includes the manual in HTML formats.
+
+Package: python-tables-data
+Architecture: all
+Multi-Arch: foreign
+Depends: ${misc:Depends}
+Description: ${source:Synopsis} (test data)
+ ${source:Extended-Description}
+ .
+ This package includes data files used for unit testing.
diff --git a/copyright b/copyright
new file mode 100644 (file)
index 0000000..8e3cd16
--- /dev/null
+++ b/copyright
@@ -0,0 +1,152 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: pytables
+Source: http://www.pytables.org
+
+Files: *
+Copyright: 2002-2004, Francesc Alted
+           2005-2007, Carabos Coop. V.
+           2008-2010, Francesc Alted
+           2011-2021, PyTables maintainers
+           2019-2023, PyTables Developers <pytables@pytables.org>
+License: BSD-3-Clause
+
+Files: debian/*
+Copyright: 2011-2025, Antonio Valentino <antonio.valentino@tiscali.it>
+License: BSD-3-Clause
+
+Files: src/H5ARRAY.c src/H5VLARRAY.c
+Copyright: 2003, F. Alted
+           2017, A. Cobb
+License: BSD-3-Clause
+
+Files: src/H5ATTR.h src/H5ATTR.c src/H5TB-opt.h src/H5TB-opt.c
+Copyright: 1998-2006, the Board of Trustees of the University of Illinois
+           2006-2007, The HDF Group (THG)
+           2005, F. Alted
+           2017, A. Cobb
+License: BSD-style
+ HDF5 (Hierarchical Data Format 5) Software Library and Utilities
+ Copyright 2006-2007 by The HDF Group (THG).
+ .
+ NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities
+ Copyright 1998-2006 by the Board of Trustees of the University of Illinois.
+ .
+ All rights reserved.
+ .
+ Contributors: National Center for Supercomputing Applications (NCSA)
+ at the University of Illinois, Fortner Software, Unidata Program
+ Center (netCDF), The Independent JPEG Group (JPEG), Jean-loup Gailly
+ and Mark Adler (gzip), and Digital Equipment Corporation (DEC).
+ .
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted for any purpose (including commercial
+ purposes) provided that the following conditions are met:
+ .
+   1. Redistributions of source code must retain the above copyright
+ notice, this list of conditions, and the following disclaimer.
+ .
+   2. Redistributions in binary form must reproduce the above
+ copyright notice, this list of conditions, and the following
+ disclaimer in the documentation and/or materials provided with the
+ distribution.
+ .
+   3. In addition, redistributions of modified forms of the source or
+ binary code must carry prominent notices stating that the original
+ code was changed and the date of the change.
+ .
+   4. All publications or advertising materials mentioning features or
+ use of this software are asked, but not required, to acknowledge that
+ it was developed by The HDF Group and by the National Center for
+ Supercomputing Applications at the University of Illinois at
+ Urbana-Champaign and credit the contributors.
+ .
+   5. Neither the name of The HDF Group, the name of the University,
+ nor the name of any Contributor may be used to endorse or promote
+ products derived from this software without specific prior written
+ permission from THG, the University, or the Contributor, respectively.
+ .
+ DISCLAIMER: THIS SOFTWARE IS PROVIDED BY THE HDF GROUP (THG) AND THE
+ CONTRIBUTORS "AS IS" WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR
+ IMPLIED. In no event shall THG or the Contributors be liable for any
+ damages suffered by the users arising out of the use of this software,
+ even if advised of the possibility of such damage.
+ .
+ Portions of HDF5 were developed with support from the University of
+ California, Lawrence Livermore National Laboratory (UC LLNL). The
+ following statement applies to those portions of the product and must
+ be retained in any redistribution of source code, binaries,
+ documentation, and/or accompanying materials:
+ .
+ This work was partially produced at the University of California,
+ Lawrence Livermore National Laboratory (UC LLNL) under contract
+ no. W-7405-ENG-48 (Contract 48) between the U.S. Department of Energy
+ (DOE) and The Regents of the University of California (University) for
+ the operation of UC LLNL.
+ .
+ DISCLAIMER: This work was prepared as an account of work sponsored by
+ an agency of the United States Government. Neither the United States
+ Government nor the University of California nor any of their
+ employees, makes any warranty, express or implied, or assumes any
+ liability or responsibility for the accuracy, completeness, or
+ usefulness of any information, apparatus, product, or process
+ disclosed, or represents that its use would not infringe privately-
+ owned rights. Reference herein to any specific commercial products,
+ process, or service by trade name, trademark, manufacturer, or
+ otherwise, does not necessarily constitute or imply its endorsement,
+ recommendation, or favoring by the United States Government or the
+ University of California. The views and opinions of authors expressed
+ herein do not necessarily state or reflect those of the United States
+ Government or the University of California, and shall not be used for
+ advertising or product endorsement purposes.
+
+Files: hdf5-blosc/*
+Copyright: 2009-2016, Francesc Alted <francesc@blosc.org>
+License: Expat
+
+Files: hdf5-blosc2/*
+Copyright: 2022, Blosc Development Team
+License: Expat
+
+License: BSD-3-Clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ a. Redistributions of source code must retain the above copyright
+    notice, this list of conditions and the following disclaimer.
+ b. Redistributions in binary form must reproduce the above copyright
+    notice, this list of conditions and the following disclaimer in the
+    documentation and/or other materials provided with the distribution.
+ c. Neither the name of the authors nor the names of its
+    contributors may be used to endorse or promote products derived
+    from this software without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ 'AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+ OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+License: Expat
+ Permission is hereby granted, free of charge, to any person obtaining
+ a copy of this software and associated documentation files (the "Software"),
+ to deal in the Software without restriction, including without limitation
+ the rights to use, copy, modify, merge, publish, distribute, sublicense,
+ and/or sell copies of the Software, and to permit persons to whom the
+ Software is furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ THE SOFTWARE.
diff --git a/gbp.conf b/gbp.conf
new file mode 100644 (file)
index 0000000..21d0417
--- /dev/null
+++ b/gbp.conf
@@ -0,0 +1,16 @@
+[DEFAULT]
+
+# The default name for the upstream branch is "upstream".
+# Change it if the name is different (for instance, "master").
+upstream-branch = upstream
+
+# The default name for the Debian branch is "master".
+# Change it if the name is different (for instance, "debian/unstable").
+debian-branch = master
+
+# git-import-orig uses the following names for the upstream tags.
+# Change the value if you are not using git-import-orig
+upstream-tag = upstream/%(version)s
+
+# Always use pristine-tar.
+pristine-tar = True
diff --git a/patches/0001-use-dynamic-lib.patch b/patches/0001-use-dynamic-lib.patch
new file mode 100644 (file)
index 0000000..205551e
--- /dev/null
@@ -0,0 +1,28 @@
+From: Antonio Valentino <antonio.valentino@tiscali.it>
+Date: Fri, 23 Aug 2013 12:19:58 +0200
+Subject: use dynamic lib
+
+The setup script detects the static version of the lzo2 library instead of
+the dynamic version (that is now located in a multi-arch path).
+This causes a link error due to not relacable code (missing -fPIC flag
+at compile time)
+
+Now the dynamic version of the lzo2 library is located in a multiarch path so
+sthe setup script
+---
+ setup.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/setup.py b/setup.py
+index b3e173a..6940156 100755
+--- a/setup.py
++++ b/setup.py
+@@ -502,7 +502,7 @@ class BasePackage:
+ class PosixPackage(BasePackage):
+     _library_prefixes = ["lib"]
+-    _library_suffixes = [".so", ".dylib", ".a"]
++    _library_suffixes = [".so", ".dylib"]  # , ".a"]
+     _runtime_prefixes = _library_prefixes
+     _runtime_suffixes = [".so", ".dylib"]
+     _component_dirs = ["include", "lib", "lib64"]
diff --git a/patches/0002-use-local-mathjax.patch b/patches/0002-use-local-mathjax.patch
new file mode 100644 (file)
index 0000000..76c0c56
--- /dev/null
@@ -0,0 +1,21 @@
+From: Antonio Valentino <antonio.valentino@tiscali.it>
+Date: Thu, 29 Jun 2017 05:31:26 +0000
+Subject: use local mathjax
+
+Forwarded: not-needed
+---
+ doc/source/conf.py | 4 ++++
+ 1 file changed, 4 insertions(+)
+
+diff --git a/doc/source/conf.py b/doc/source/conf.py
+index 090dbfa..40a5c7d 100644
+--- a/doc/source/conf.py
++++ b/doc/source/conf.py
+@@ -210,3 +210,7 @@ extlinks = {
+ autodoc_member_order = "groupwise"
+ autoclass_content = "class"
+ autosummary_generate = []
++
++# -- Options for mathjax -----------------------------------------------------
++mathjax_path='file:///usr/share/javascript/mathjax/MathJax.js'
++
diff --git a/patches/0003-remove-gtags.patch b/patches/0003-remove-gtags.patch
new file mode 100644 (file)
index 0000000..bb44ebf
--- /dev/null
@@ -0,0 +1,29 @@
+From: Antonio Valentino <antonio.valentino@tiscali.it>
+Date: Sun, 22 Apr 2018 16:32:56 +0000
+Subject: remove gtags
+
+Remove Google Analytics script from the doc template layout to
+avoid privacy-breach-generic.
+---
+ doc/source/_templates/layout.html | 10 ----------
+ 1 file changed, 10 deletions(-)
+
+diff --git a/doc/source/_templates/layout.html b/doc/source/_templates/layout.html
+index f47665b..03b028f 100644
+--- a/doc/source/_templates/layout.html
++++ b/doc/source/_templates/layout.html
+@@ -2,14 +2,4 @@
+ {%- block extrahead %}
+ {{ super() }}
+-<!-- Global site tag (gtag.js) - Google Analytics -->
+-<script async src="https://www.googletagmanager.com/gtag/js?id=UA-111342564-1"></script>
+-<script>
+-  window.dataLayer = window.dataLayer || [];
+-  function gtag(){dataLayer.push(arguments);}
+-  gtag('js', new Date());
+-
+-  gtag('config', 'UA-111342564-1');
+-</script>
+-
+ {% endblock %}
diff --git a/patches/0004-Skip-index-backcompat-tests-on-bingendian.patch b/patches/0004-Skip-index-backcompat-tests-on-bingendian.patch
new file mode 100644 (file)
index 0000000..7c8fbd7
--- /dev/null
@@ -0,0 +1,37 @@
+From: Antonio Valentino <antonio.valentino@tiscali.it>
+Date: Sat, 3 Aug 2019 16:22:13 +0000
+Subject: Skip index backcompat tests on bingendian
+
+Forwarded: not-needed
+---
+ tables/tests/test_index_backcompat.py | 4 ++++
+ 1 file changed, 4 insertions(+)
+
+diff --git a/tables/tests/test_index_backcompat.py b/tables/tests/test_index_backcompat.py
+index d921baa..0bcf026 100644
+--- a/tables/tests/test_index_backcompat.py
++++ b/tables/tests/test_index_backcompat.py
+@@ -1,7 +1,9 @@
+ from tables.tests import common
++import sys
+ # Check indexes from PyTables version 2.0
++@common.unittest.skipIf(sys.byteorder != 'little', 'broken on big-endian')
+ class IndexesTestCase(common.TestFileMixin, common.PyTablesTestCase):
+     def setUp(self):
+@@ -139,11 +141,13 @@ class IndexesTestCase(common.TestFileMixin, common.PyTablesTestCase):
+ # Check indexes from PyTables version 2.0
++@common.unittest.skipIf(sys.byteorder != 'little', 'broken on big-endian')
+ class Indexes2_0TestCase(IndexesTestCase):
+     h5fname = common.test_filename("indexes_2_0.h5")
+ # Check indexes from PyTables version 2.1
++@common.unittest.skipIf(sys.byteorder != 'little', 'broken on big-endian')
+ class Indexes2_1TestCase(IndexesTestCase):
+     h5fname = common.test_filename("indexes_2_1.h5")
diff --git a/patches/0005-No-python-blosc2.patch b/patches/0005-No-python-blosc2.patch
new file mode 100644 (file)
index 0000000..38e00bc
--- /dev/null
@@ -0,0 +1,31 @@
+From: Antonio Valentino <antonio.valentino@tiscali.it>
+Date: Sun, 7 Apr 2024 06:53:27 +0000
+Subject: No python-blosc2
+
+Forwarded: not-needed
+---
+ pyproject.toml | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/pyproject.toml b/pyproject.toml
+index 64ada51..d626fc4 100644
+--- a/pyproject.toml
++++ b/pyproject.toml
+@@ -16,7 +16,7 @@ requires = [
+     # Included here for seamless wheel builds.
+     # Packagers can choose to replace it by externally provided
+     # c-blosc2 library and headers
+-    "blosc2 >= 2.3.0",
++    # "blosc2 >= 2.3.0",
+     "typing-extensions >= 4.4.0",
+ ]
+ build-backend = "setuptools.build_meta"
+@@ -78,7 +78,7 @@ dependencies = [
+     "numexpr >= 2.6.2",
+     "packaging",
+     "py-cpuinfo",
+-    "blosc2 >= 2.3.0",
++    # "blosc2 >= 2.3.0",
+     "typing-extensions >= 4.4.0",
+ ]
diff --git a/patches/0006-Build-with-numpy-1.x.patch b/patches/0006-Build-with-numpy-1.x.patch
new file mode 100644 (file)
index 0000000..6b1cfa6
--- /dev/null
@@ -0,0 +1,22 @@
+From: Antonio Valentino <antonio.valentino@tiscali.it>
+Date: Sun, 18 Aug 2024 09:59:35 +0000
+Subject: Build with numpy 1.x
+
+Forwarded: not-needed
+---
+ pyproject.toml | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/pyproject.toml b/pyproject.toml
+index d626fc4..7c02abc 100644
+--- a/pyproject.toml
++++ b/pyproject.toml
+@@ -9,7 +9,7 @@ requires = [
+     # Please refer to https://github.com/PyTables/PyTables/issues/1200
+     # If you change this to build with `numpy` 1, please update `numpy` in `dependencies` as well
+     # "numpy >= 1.20.0,<2",
+-    "numpy >= 2",
++    "numpy",
+     "packaging",
+     "py-cpuinfo",
+     "Cython >=0.29.32",
diff --git a/patches/series b/patches/series
new file mode 100644 (file)
index 0000000..0490855
--- /dev/null
@@ -0,0 +1,6 @@
+0001-use-dynamic-lib.patch
+0002-use-local-mathjax.patch
+0003-remove-gtags.patch
+0004-Skip-index-backcompat-tests-on-bingendian.patch
+0005-No-python-blosc2.patch
+0006-Build-with-numpy-1.x.patch
diff --git a/pt2to3.1 b/pt2to3.1
new file mode 100644 (file)
index 0000000..68c88e9
--- /dev/null
+++ b/pt2to3.1
@@ -0,0 +1,55 @@
+.\"                                      Hey, EMACS: -*- nroff -*-
+.\" First parameter, NAME, should be all caps
+.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
+.\" other parameters are allowed: see man(7), man(1)
+.TH PT2TO3 1 "May 15, 2013"
+.\" Please adjust this date whenever revising the manpage.
+.\"
+.\" Some roff macros, for reference:
+.\" .nh        disable hyphenation
+.\" .hy        enable hyphenation
+.\" .ad l      left justify
+.\" .ad b      justify to both left and right margins
+.\" .nf        disable filling
+.\" .fi        enable filling
+.\" .br        insert line break
+.\" .sp <n>    insert n+1 empty lines
+.\" for manpage-specific macros, see man(7)
+.SH NAME
+pt2to3 \- PyTables 2.x \-> 3.x API transition tool.
+.SH SYNOPSIS
+.B pt2to3
+[ OPTIONS ]
+.RB filename
+.br
+.SH DESCRIPTION
+This tool displays to standard out, so it is common to pipe this to another
+file: $ pt2to3 oldfile.py > newfile.py.
+
+.SH OPTIONS
+A summary of options is included below.
+.TP
+.B \-r, \--reverse
+Reverts changes, going from 3.x \-> 2.x.
+.TP
+.B \-p, \--no-ignore-previous
+Ignores previous_api() calls.
+.TP
+.B \-o OUTPUT
+Output file to write to..
+.TP
+.B \-i, \--inplace
+Overwrites the file in-place.
+.TP
+.B \-h
+Print help on usage.
+
+.br
+
+.SH SEE ALSO
+.BR ptrepack (1), ptdump (1).
+.br
+These utilities are documented fully by
+.IR "PyTables user's manual".
+.SH AUTHOR
+This manual page was written by Antonio Valentino <antonio.valentino@tiscali.it>.
diff --git a/ptdump.1 b/ptdump.1
new file mode 100644 (file)
index 0000000..010aed0
--- /dev/null
+++ b/ptdump.1
@@ -0,0 +1,63 @@
+.\"                                      Hey, EMACS: -*- nroff -*-
+.\" First parameter, NAME, should be all caps
+.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
+.\" other parameters are allowed: see man(7), man(1)
+.TH PTDUMP 1 "July 7, 2007"
+.\" Please adjust this date whenever revising the manpage.
+.\"
+.\" Some roff macros, for reference:
+.\" .nh        disable hyphenation
+.\" .hy        enable hyphenation
+.\" .ad l      left justify
+.\" .ad b      justify to both left and right margins
+.\" .nf        disable filling
+.\" .fi        enable filling
+.\" .br        insert line break
+.\" .sp <n>    insert n+1 empty lines
+.\" for manpage-specific macros, see man(7)
+.SH NAME
+ptdump \- Lets you dig into the contents of a \fIPyTables\fR file.
+.SH SYNOPSIS
+.B ptdump
+.RB [\| \-dvacih \|]
+.RB [\| \-R \| \  start,stop,step]
+.RB file[:nodepath]
+.br
+.SH DESCRIPTION
+Allows you look into the contents of your \fIPyTables\fR files. It lets
+you see not only the data but also the metadata (that is, the structure
+and additional information in the form of attributes).
+
+.SH OPTIONS
+A summary of options is included below.
+.TP
+.B \-d
+Dump data information on leaves.
+.TP
+.B \-v
+Dump more metainformation on nodes.
+.TP
+.B \-a
+Show attributes in nodes (only useful when \-v or \-d are active).
+.TP
+.B \-c
+Show info of columns in tables (only useful when \-v or \-d are active).
+.TP
+.B \-i
+Show info of indexed column (only useful when \-v or \-d are active).
+.TP
+.BI \-R\  start,stop,step
+Select a range of rows in the form "start,stop,step" for \fIall\fR leaves.
+.TP
+.B \-h
+Print help on usage.
+
+.br
+
+.SH SEE ALSO
+.BR ptrepack (1).
+.br
+These utilities are documented fully by
+.IR "PyTables user's manual".
+.SH AUTHOR
+This manual page was written by Francesc Altet <faltet@carabos.com>.
diff --git a/ptrepack.1 b/ptrepack.1
new file mode 100644 (file)
index 0000000..4eebf98
--- /dev/null
@@ -0,0 +1,107 @@
+.\"                                      Hey, EMACS: -*- nroff -*-
+.\" First parameter, NAME, should be all caps
+.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
+.\" other parameters are allowed: see man(7), man(1)
+.TH PTREPACK 1 "July 7, 2007"
+.\" Please adjust this date whenever revising the manpage.
+.\"
+.\" Some roff macros, for reference:
+.\" .nh        disable hyphenation
+.\" .hy        enable hyphenation
+.\" .ad l      left justify
+.\" .ad b      justify to both left and right margins
+.\" .nf        disable filling
+.\" .fi        enable filling
+.\" .br        insert line break
+.\" .sp <n>    insert n+1 empty lines
+.\" for manpage-specific macros, see man(7)
+.SH NAME
+ptrepack \- Copy any PyTables Leaf, Group or complete subtree into another file.
+.SH SYNOPSIS
+.B ptrepack
+.RB \-h
+.RB \-v
+.RB \-o
+.RB \-R
+.IR start,stop,step
+.RB \-\-non\-recursive
+.RB \-\-dest-title=title
+.RB \-\-dont\-copyuser\-attrs
+.RB \-\-overwrite\-nodes
+.RB \-\-complevel=(0\-9)
+.RB \-\-complib=lib
+.RB \-\-shuffle=(0|1)
+.RB \-\-fletcher32=(0|1)
+.RB \-\-keep\-source\-filters
+.RB \-\-upgrade\-flavors
+.RB \-\-dont\-regenerate\-old\-indexes
+.RB sourcefile:sourcegroup
+.RB destfile:destgroup
+.br
+.SH DESCRIPTION
+Copy any Leaf, Group or complete subtree from a PyTables file into another file.
+.SH OPTIONS
+A summary of options is included below.
+.TP
+.B \-h
+Prints a help text.
+.TP
+.B \-v
+Show more information.
+.TP
+.B \-o
+Overwrite destination file.
+.TP
+.BI \-R\ RANGE
+Select a RANGE of rows in the form \fIstart,stop,step\fR during the copy of
+\fIall\fR the leaves.
+.TP
+.BI \-\-non\-recursive
+Do not do a recursive copy. Default is to do it.
+.TP
+.BI \-\-dest\-title=title
+Title for the new file (if not specified, the source is copied).
+.TP
+.BI \-\-dont\-copy\-userattrs
+Do not copy the user attrs (default is to do it).
+.TP
+.BI \-\-overwrite\-nodes
+Overwrite destination nodes if they exist. Default is not to overwrite
+them.
+.TP
+.BI \-\-complevel=(0-9)
+Set a compression level (0 for no compression, which is the default).
+.TP
+.BI \-\-complib=lib
+Set the compression library to be used during the copy. \fIlib\fR can
+be set to "zlib", "lzo", "ucl" or "bzip2". Defaults to "zlib".
+.TP
+.BI \-\-shuffle=(0|1)
+Activate or not the shuffling filter (default is active if complevel>0).
+.TP
+.BI \-\-fletcher32=(0|1)
+Whether to activate or not the fletcher32 filter (not active by default).
+.TP
+.BI  \-\-keep\-source\-filters
+Use the original filters in source files. The default is not doing that
+if any of \-\-complevel, \-\-complib, \-\-shuffle or \-\-fletcher32
+option is specified.
+.TP
+.BI  \-\-upgrade\-flavors
+When repacking PyTables 1.x files, the flavor of leaves will be
+unset. With this, such a leaves will be serialized as objects with the
+internal flavor ("numpy" for 2.x series).
+.TP
+.BI  \-\-dont\-regenerate\-old\-indexes
+Disable regenerating old indexes. The default is to regenerate old
+indexes as they are found.
+
+.br
+
+.SH SEE ALSO
+.BR ptdump (1).
+.br
+These utilities are documented fully by
+.IR "PyTables user's manual".
+.SH AUTHOR
+This manual page was written by Francesc Altet <faltet@carabos.com>.
diff --git a/pttree.1 b/pttree.1
new file mode 100644 (file)
index 0000000..04bdb6d
--- /dev/null
+++ b/pttree.1
@@ -0,0 +1,79 @@
+.\"                                      Hey, EMACS: -*- nroff -*-
+.\" First parameter, NAME, should be all caps
+.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
+.\" other parameters are allowed: see man(7), man(1)
+.TH pttree 1 "May 15, 2013"
+.\" Please adjust this date whenever revising the manpage.
+.\"
+.\" Some roff macros, for reference:
+.\" .nh        disable hyphenation
+.\" .hy        enable hyphenation
+.\" .ad l      left justify
+.\" .ad b      justify to both left and right margins
+.\" .nf        disable filling
+.\" .fi        enable filling
+.\" .br        insert line break
+.\" .sp <n>    insert n+1 empty lines
+.\" for manpage-specific macros, see man(7)
+.SH NAME
+pttree \- prints a quick overview of the contents of PyTables HDF5 files.
+.SH SYNOPSIS
+.B pttree
+[ OPTIONS ]
+.RB filename[:nodepath]
+.br
+.SH DESCRIPTION
+.B pttree
+is designed to give a quick overview of the contents of a PyTables
+HDF5 file by printing a depth-indented list of nodes, similar to the output of
+the Unix `tree` function. It can also display the size, shape and compression
+states of individual nodes, as well as summary information for the whole file.
+For a more verbose output (including metadata), see `ptdump`.
+
+.SH OPTIONS
+A summary of options is included below.
+.TP
+.B \-L MAX_DEPTH, \--max-level MAX_DEPTH
+maximum branch depth of tree to display (-1 == no limit)
+.TP
+.B \-S SORT_BY, \--sort-by SORT_BY
+artificially order nodes, can be either "size", "name" or "none"
+.TP
+.B \--print-size
+print size of each node/branch
+.TP
+.B \--no-print-size
+.TP
+.B \--print-shape
+print shape of each node
+.TP
+.B \--no-print-shape
+.TP
+.B \--print-compression
+print compression library(level) for each compressed node
+.TP
+.B \--no-print-compression
+.TP
+.B \--print-percent
+print size of each node as a % of the total tree size on disk
+.TP
+.B \--no-print-percent
+.TP
+.B \--use-si-units
+report sizes in SI units (1 MB == 10^6 B)
+.TP
+.B \--use-binary-units
+report sizes in binary units (1 MiB == 2^20 B)
+.TP
+.B \-h
+Print help on usage.
+
+.br
+
+.SH SEE ALSO
+.BR ptdump (1).
+.br
+These utilities are documented fully by
+.IR "PyTables user's manual".
+.SH AUTHOR
+This manual page was written by Antonio Valentino <antonio.valentino@tiscali.it>.
diff --git a/python-tables-data.install b/python-tables-data.install
new file mode 100644 (file)
index 0000000..670ac07
--- /dev/null
@@ -0,0 +1,5 @@
+usr/lib/python3*/dist-packages/tables/tests/*.h5 usr/share/python-tables/tests
+usr/lib/python3*/dist-packages/tables/tests/*.mat usr/share/python-tables/tests
+usr/lib/python3*/dist-packages/tables/nodes/tests/*.h5 usr/share/python-tables/nodes/tests
+usr/lib/python3*/dist-packages/tables/nodes/tests/*.xbm usr/share/python-tables/nodes/tests
+usr/lib/python3*/dist-packages/tables/nodes/tests/*.dat usr/share/python-tables/nodes/tests
diff --git a/python-tables-doc.doc-base b/python-tables-doc.doc-base
new file mode 100644 (file)
index 0000000..ed6661a
--- /dev/null
@@ -0,0 +1,14 @@
+Document: pytables
+Title: Debian pytables Manual
+Author: Francesc Alted, Ivan Vilata, Scott Prater, Vicent Mas, Tom Hedley,
+        Antonio Valentino, Jeffrey Whitaker, Anthony Scopatz, Andrea Bedini
+Abstract: This document includes the PyTables user manual and the
+ reference guide for developers.
+Section: Programming/Python
+
+Format: HTML
+Index: /usr/share/doc/python-tables-doc/html/index.html
+Files: /usr/share/doc/python-tables-doc/html/*.html
+
+Format: text
+Files: /usr/share/doc/python-tables-doc/html/_sources/*.txt
diff --git a/python-tables-doc.docs b/python-tables-doc.docs
new file mode 100644 (file)
index 0000000..d03d55a
--- /dev/null
@@ -0,0 +1,3 @@
+README.rst
+RELEASE_NOTES.rst
+THANKS
diff --git a/python-tables-doc.examples b/python-tables-doc.examples
new file mode 100644 (file)
index 0000000..e39721e
--- /dev/null
@@ -0,0 +1 @@
+examples/*
diff --git a/python-tables-doc.install b/python-tables-doc.install
new file mode 100644 (file)
index 0000000..5723017
--- /dev/null
@@ -0,0 +1,2 @@
+bench usr/share/doc/python-tables-doc
+.pybuild/docs/html usr/share/doc/python-tables-doc
diff --git a/python-tables-doc.links b/python-tables-doc.links
new file mode 100644 (file)
index 0000000..5c6f570
--- /dev/null
@@ -0,0 +1,3 @@
+usr/share/javascript/jquery-cookie/jquery.cookie.js usr/share/doc/python-tables-doc/html/_static/jquery.cookie.js
+usr/share/doc/python-tables-doc/html/_sources/release-notes/RELEASE_NOTES_v2.1.x-pro.rst.txt usr/share/doc/python-tables-doc/html/_sources/release-notes/RELEASE_NOTES_v2.1.x.rst.txt
+
diff --git a/python3-tables-lib.install b/python3-tables-lib.install
new file mode 100644 (file)
index 0000000..8e91eb5
--- /dev/null
@@ -0,0 +1 @@
+usr/lib/python3*/*-packages/tables/*.cpython-3*.so
diff --git a/python3-tables.install b/python3-tables.install
new file mode 100644 (file)
index 0000000..cdc54a7
--- /dev/null
@@ -0,0 +1,9 @@
+usr/lib/python3*/dist-packages/tables/*.py
+usr/lib/python3*/dist-packages/tables/*.pxd
+usr/lib/python3*/dist-packages/tables/misc/*.py
+usr/lib/python3*/dist-packages/tables/nodes/*.py
+usr/lib/python3*/dist-packages/tables/nodes/tests/*.py
+usr/lib/python3*/dist-packages/tables/scripts/*.py
+usr/lib/python3*/dist-packages/tables/tests/*.py
+usr/lib/python3*/dist-packages/tables*.*-info
+usr/bin/*
diff --git a/python3-tables.links b/python3-tables.links
new file mode 100644 (file)
index 0000000..935851f
--- /dev/null
@@ -0,0 +1,53 @@
+usr/share/python-tables/tests/Table2_1_lzo_nrv2e_shuffle.h5  usr/lib/python3/dist-packages/tables/tests/Table2_1_lzo_nrv2e_shuffle.h5
+usr/share/python-tables/tests/Tables_lzo1.h5                 usr/lib/python3/dist-packages/tables/tests/Tables_lzo1.h5
+usr/share/python-tables/tests/Tables_lzo1_shuffle.h5         usr/lib/python3/dist-packages/tables/tests/Tables_lzo1_shuffle.h5
+usr/share/python-tables/tests/Tables_lzo2.h5                 usr/lib/python3/dist-packages/tables/tests/Tables_lzo2.h5
+usr/share/python-tables/tests/Tables_lzo2_shuffle.h5         usr/lib/python3/dist-packages/tables/tests/Tables_lzo2_shuffle.h5
+usr/share/python-tables/tests/array_mdatom.h5                usr/lib/python3/dist-packages/tables/tests/array_mdatom.h5
+usr/share/python-tables/tests/attr-u16.h5                    usr/lib/python3/dist-packages/tables/tests/attr-u16.h5
+usr/share/python-tables/tests/b2nd-no-chunkshape.h5          usr/lib/python3/dist-packages/tables/tests/b2nd-no-chunkshape.h5
+usr/share/python-tables/tests/blosc_bigendian.h5             usr/lib/python3/dist-packages/tables/tests/blosc_bigendian.h5
+usr/share/python-tables/tests/bug-idx.h5                     usr/lib/python3/dist-packages/tables/tests/bug-idx.h5
+usr/share/python-tables/tests/elink.h5                       usr/lib/python3/dist-packages/tables/tests/elink.h5
+usr/share/python-tables/tests/elink2.h5                      usr/lib/python3/dist-packages/tables/tests/elink2.h5
+usr/share/python-tables/tests/ex-noattr.h5                   usr/lib/python3/dist-packages/tables/tests/ex-noattr.h5
+usr/share/python-tables/tests/flavored_vlarrays-format1.6.h5 usr/lib/python3/dist-packages/tables/tests/flavored_vlarrays-format1.6.h5
+usr/share/python-tables/tests/float.h5                       usr/lib/python3/dist-packages/tables/tests/float.h5
+usr/share/python-tables/tests/idx-std-1.x.h5                 usr/lib/python3/dist-packages/tables/tests/idx-std-1.x.h5
+usr/share/python-tables/tests/indexes_2_0.h5                 usr/lib/python3/dist-packages/tables/tests/indexes_2_0.h5
+usr/share/python-tables/tests/indexes_2_1.h5                 usr/lib/python3/dist-packages/tables/tests/indexes_2_1.h5
+usr/share/python-tables/tests/issue_368.h5                   usr/lib/python3/dist-packages/tables/tests/issue_368.h5
+usr/share/python-tables/tests/issue_560.h5                   usr/lib/python3/dist-packages/tables/tests/issue_560.h5
+usr/share/python-tables/tests/itemsize.h5                    usr/lib/python3/dist-packages/tables/tests/itemsize.h5
+usr/share/python-tables/tests/nested-type-with-gaps.h5       usr/lib/python3/dist-packages/tables/tests/nested-type-with-gaps.h5
+usr/share/python-tables/tests/non-chunked-table.h5           usr/lib/python3/dist-packages/tables/tests/non-chunked-table.h5
+usr/share/python-tables/tests/oldflavor_numeric.h5           usr/lib/python3/dist-packages/tables/tests/oldflavor_numeric.h5
+usr/share/python-tables/tests/out_of_order_types.h5          usr/lib/python3/dist-packages/tables/tests/out_of_order_types.h5
+usr/share/python-tables/tests/python2.h5                     usr/lib/python3/dist-packages/tables/tests/python2.h5
+usr/share/python-tables/tests/python3.h5                     usr/lib/python3/dist-packages/tables/tests/python3.h5
+usr/share/python-tables/tests/scalar.h5                      usr/lib/python3/dist-packages/tables/tests/scalar.h5
+usr/share/python-tables/tests/slink.h5                       usr/lib/python3/dist-packages/tables/tests/slink.h5
+usr/share/python-tables/tests/smpl_SDSextendible.h5          usr/lib/python3/dist-packages/tables/tests/smpl_SDSextendible.h5
+usr/share/python-tables/tests/smpl_compound_chunked.h5       usr/lib/python3/dist-packages/tables/tests/smpl_compound_chunked.h5
+usr/share/python-tables/tests/smpl_enum.h5                   usr/lib/python3/dist-packages/tables/tests/smpl_enum.h5
+usr/share/python-tables/tests/smpl_f64be.h5                  usr/lib/python3/dist-packages/tables/tests/smpl_f64be.h5
+usr/share/python-tables/tests/smpl_f64le.h5                  usr/lib/python3/dist-packages/tables/tests/smpl_f64le.h5
+usr/share/python-tables/tests/smpl_i32be.h5                  usr/lib/python3/dist-packages/tables/tests/smpl_i32be.h5
+usr/share/python-tables/tests/smpl_i32le.h5                  usr/lib/python3/dist-packages/tables/tests/smpl_i32le.h5
+usr/share/python-tables/tests/smpl_i64be.h5                  usr/lib/python3/dist-packages/tables/tests/smpl_i64be.h5
+usr/share/python-tables/tests/smpl_i64le.h5                  usr/lib/python3/dist-packages/tables/tests/smpl_i64le.h5
+usr/share/python-tables/tests/smpl_unsupptype.h5             usr/lib/python3/dist-packages/tables/tests/smpl_unsupptype.h5
+usr/share/python-tables/tests/test_szip.h5                   usr/lib/python3/dist-packages/tables/tests/test_szip.h5
+usr/share/python-tables/tests/time-table-vlarray-1_x.h5      usr/lib/python3/dist-packages/tables/tests/time-table-vlarray-1_x.h5
+usr/share/python-tables/tests/times-nested-be.h5             usr/lib/python3/dist-packages/tables/tests/times-nested-be.h5
+usr/share/python-tables/tests/vlstr_attr.h5                  usr/lib/python3/dist-packages/tables/tests/vlstr_attr.h5
+usr/share/python-tables/tests/vlunicode_endian.h5            usr/lib/python3/dist-packages/tables/tests/vlunicode_endian.h5
+usr/share/python-tables/tests/zerodim-attrs-1.3.h5           usr/lib/python3/dist-packages/tables/tests/zerodim-attrs-1.3.h5
+usr/share/python-tables/tests/zerodim-attrs-1.4.h5           usr/lib/python3/dist-packages/tables/tests/zerodim-attrs-1.4.h5
+usr/share/python-tables/tests/matlab_file.mat                usr/lib/python3/dist-packages/tables/tests/matlab_file.mat
+usr/share/python-tables/tests/test_ref_array1.mat            usr/lib/python3/dist-packages/tables/tests/test_ref_array1.mat
+usr/share/python-tables/tests/test_ref_array2.mat            usr/lib/python3/dist-packages/tables/tests/test_ref_array2.mat
+usr/share/python-tables/nodes/tests/test_filenode_v1.h5      usr/lib/python3/dist-packages/tables/nodes/tests/test_filenode_v1.h5
+usr/share/python-tables/nodes/tests/test_filenode.xbm        usr/lib/python3/dist-packages/tables/nodes/tests/test_filenode.xbm
+usr/share/python-tables/nodes/tests/test_filenode.dat        usr/lib/python3/dist-packages/tables/nodes/tests/test_filenode.dat
+
diff --git a/python3-tables.lintian-overrides b/python3-tables.lintian-overrides
new file mode 100644 (file)
index 0000000..8fced33
--- /dev/null
@@ -0,0 +1,9 @@
+# scripts for entry points of support tools
+python3-tables: application-in-library-section python [usr/bin/pt*]
+library-package-name-for-application [usr/bin/pt*]
+
+# the python-tables-data package only contains common data
+python-package-depends-on-package-from-other-python-variant Depends: python-tables-data
+
+# False positive
+package-contains-documentation-outside-usr-share-doc [usr/lib/python3/dist-packages/tables-*.*-info/*]
diff --git a/python3-tables.manpages b/python3-tables.manpages
new file mode 100644 (file)
index 0000000..2189ff1
--- /dev/null
@@ -0,0 +1,4 @@
+debian/ptdump.1
+debian/ptrepack.1
+debian/pt2to3.1
+debian/pttree.1
diff --git a/rules b/rules
new file mode 100755 (executable)
index 0000000..187328b
--- /dev/null
+++ b/rules
@@ -0,0 +1,51 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+#export DH_VERBOSE=1
+
+export DEB_BUILD_MAINT_OPTIONS=hardening=+all # ,-pie
+
+ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),)
+export HDF5_DIR := /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial
+endif
+
+export DISABLE_AVX2=1 DISABLE_SSE2=1
+export PYBUILD_TEST_CUSTOM=1
+export PYBUILD_TEST_ARGS=\
+cd {build_dir} && \
+env PYTHONPATH={build_dir} \
+python{version} -c "import tables as tb, sys; sys.exit(tb.test(verbose=2))"
+export PYBUILD_AFTER_TEST=\
+$(RM) -r {build_dir}/tables/__pycache__ && \
+$(RM) -r {build_dir}/tables/*/__pycache__ && \
+$(RM) -r {build_dir}/tables/nodes/*/__pycache__
+
+%:
+       dh $@ --buildsystem=pybuild
+
+execute_after_dh_auto_build: export http_proxy=127.0.0.1:9
+execute_after_dh_auto_build: export https_proxy=127.0.0.1:9
+execute_after_dh_auto_build:
+       $(RM) $(CURDIR)/.pybuild/cpython3_*/build/tables/*.pyx
+       $(RM) $(CURDIR)/.pybuild/cpython3_*/build/tables/*.c
+       $(RM) $(CURDIR)/.pybuild/cpython3_*/build/tables/*/*.c
+ifeq (,$(filter nodoc,$(DEB_BUILD_OPTIONS)))
+       cd $(CURDIR)/.pybuild/cpython3_$(shell py3versions -vd)/build && \
+       env PYTHONPATH=. \
+       python3 -m sphinx -E -T -N -b html $(CURDIR)/doc/source $(CURDIR)/.pybuild/docs/html
+       rm -rf $(CURDIR)/.pybuild/docs/html/.doctrees
+       find $(CURDIR)/.pybuild/ -d -name __pycache__ -exec rm -rf {} +
+endif
+
+override_dh_strip:
+       dh_strip -ppython3-tables-lib
+
+override_dh_installchangelogs:
+       dh_installchangelogs -k RELEASE_NOTES.rst
+
+override_dh_compress:
+       dh_compress -X.txt -X.pdf -X.py -X.h5
+
+override_dh_auto_test:
+       echo testsuite disabled
+
diff --git a/source/format b/source/format
new file mode 100644 (file)
index 0000000..163aaf8
--- /dev/null
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/source/lintian-overrides b/source/lintian-overrides
new file mode 100644 (file)
index 0000000..c979e41
--- /dev/null
@@ -0,0 +1,2 @@
+# Man pages already forwarded upstream
+maintainer-manual-page [debian/pt*.1]
diff --git a/upstream/metadata b/upstream/metadata
new file mode 100644 (file)
index 0000000..abaad0f
--- /dev/null
@@ -0,0 +1,5 @@
+Bug-Database: https://github.com/PyTables/PyTables/issues
+Bug-Submit: https://github.com/PyTables/PyTables/issues/new
+Repository: https://github.com/PyTables/PyTables.git
+Repository-Browse: https://github.com/PyTables/PyTables
+Security-Contact: https://github.com/PyTables/PyTables/tree/HEAD/SECURITY.md
diff --git a/watch b/watch
new file mode 100644 (file)
index 0000000..56aebae
--- /dev/null
+++ b/watch
@@ -0,0 +1,3 @@
+version=4
+opts=filenamemangle=s/.+\/v\.?(\d\S*)\.tar\.gz/PyTables-$1\.tar\.gz/ \
+  https://github.com/PyTables/PyTables/tags .*/v\.?(\d\S*)\.tar\.gz