Add lintian overrides

diff --git a/debian/python-pysam-tests.lintian-overrides b/debian/python-pysam-tests.lintian-overrides
new file mode 100644 (file)
index 0000000..61c0327
--- /dev/null
+++ b/debian/python-pysam-tests.lintian-overrides
@@ -0,0 +1,2 @@
+# Upstream-provided gzip file is independent of the build process
+package-contains-timestamped-gzip usr/share/doc/python-pysam/tests/pysam_data/ex1.sam.gz

diff --git a/debian/python-pysam.lintian-overrides b/debian/python-pysam.lintian-overrides
new file mode 100644 (file)
index 0000000..d36d4ce
--- /dev/null
+++ b/debian/python-pysam.lintian-overrides
@@ -0,0 +1,6 @@
+# These are apparently false-positives.
+# Inspection of the build logs shows that these are indeed compiled with
+# -D_FORTIFY_SOURCE=2
+hardening-no-fortify-functions usr/lib/python2.7/dist-packages/pysam/TabProxies.x86_64-linux-gnu.so
+hardening-no-fortify-functions usr/lib/python2.7/dist-packages/pysam/calignmentfile.x86_64-linux-gnu.so
+hardening-no-fortify-functions usr/lib/python2.7/dist-packages/pysam/ctabix.x86_64-linux-gnu.so

diff --git a/debian/python3-pysam.lintian-overrides b/debian/python3-pysam.lintian-overrides
new file mode 100644 (file)
index 0000000..2af9286
--- /dev/null
+++ b/debian/python3-pysam.lintian-overrides
@@ -0,0 +1,6 @@
+# These are apparently false-positives
+# Inspection of the build logs shows that these are indeed compiled with
+# -D_FORTIFY_SOURCE=2
+hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/TabProxies.cpython-34m-x86_64-linux-gnu.so
+hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/calignmentfile.cpython-34m-x86_64-linux-gnu.so
+hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/ctabix.cpython-34m-x86_64-linux-gnu.so