Import python-fitsio_0.9.12+dfsg-1.debian.tar.xz

[dgit import tarball python-fitsio 0.9.12+dfsg-1 python-fitsio_0.9.12+dfsg-1.debian.tar.xz]

diff --git a/README.Debian b/README.Debian
new file mode 100644 (file)
index 0000000..8ce7127
--- /dev/null
+++ b/README.Debian
@@ -0,0 +1,6 @@
+Contrary to the original package, the Debian package uses the
+(unpatched) cfitsio library that comes with Debian. This causes the
+bzip2 compression switched off, and the compressed read with the "u2"
+datatype does not work.
+
+-- Ole Streicher <olebole@debian.org>  Wed, 13 Apr 2016 17:24:30 +0200

diff --git a/changelog b/changelog
new file mode 100644 (file)
index 0000000..a3b4b13
--- /dev/null
+++ b/changelog
@@ -0,0 +1,92 @@
+python-fitsio (0.9.12+dfsg-1) unstable; urgency=low
+
+  * New upstream version 0.9.12+dfsg. Rediff patches
+  * Push Standards-Version to 4.3.0. No changes required.
+  * New build dependencies setuptools
+  * Push compat to 12
+
+ -- Ole Streicher <olebole@debian.org>  Fri, 18 Jan 2019 09:59:47 +0100
+
+python-fitsio (0.9.11+dfsg-4) unstable; urgency=medium
+
+  [ Ole Streicher ]
+  * Drop alignment patches. They didn't work.
+
+  [ Matthias Klose ]
+  * Dont run autotests on armhf for now (partially resolves #902990)
+
+ -- Ole Streicher <olebole@debian.org>  Sun, 15 Jul 2018 16:36:56 +0200
+
+python-fitsio (0.9.11+dfsg-3) unstable; urgency=medium
+
+  * Disable failing checksum test
+
+ -- Ole Streicher <olebole@debian.org>  Fri, 13 Jul 2018 08:47:51 +0200
+
+python-fitsio (0.9.11+dfsg-2) unstable; urgency=medium
+
+  * Update VCS fields to use salsa.d.o
+  * Push compat to 11
+  * Push Standards-Version to 4.1.5. Change copyright format URL to https
+
+ -- Ole Streicher <olebole@debian.org>  Thu, 05 Jul 2018 11:09:18 +0200
+
+python-fitsio (0.9.11+dfsg-1) unstable; urgency=low
+
+  * Propagate CI test exit code
+  * New upstream version 0.9.11+dfsg
+  * Rediff patches
+  * Push Standards-Version to 4.0.0. No changes
+
+ -- Ole Streicher <olebole@debian.org>  Fri, 23 Jun 2017 17:44:06 +0200
+
+python-fitsio (0.9.10+dfsg-1) unstable; urgency=medium
+
+  * Imported Upstream version 0.9.10+dfsg
+
+ -- Ole Streicher <olebole@debian.org>  Thu, 18 Aug 2016 14:38:31 +0200
+
+python-fitsio (0.9.9.1+dfsg-1) unstable; urgency=low
+
+  * Imported Upstream version 0.9.9.1+dfsg
+
+ -- Ole Streicher <olebole@debian.org>  Wed, 20 Jul 2016 17:52:17 +0200
+
+python-fitsio (0.9.9+dfsg-1) unstable; urgency=low
+
+  * Imported Upstream version 0.9.9+dfsg
+
+ -- Ole Streicher <olebole@debian.org>  Fri, 15 Jul 2016 08:54:33 +0200
+
+python-fitsio (0.9.8+dfsg-5) unstable; urgency=low
+
+  * Skip bzip2 unittest instead of xfail to avoid bus error on sparc64
+
+ -- Ole Streicher <olebole@debian.org>  Thu, 21 Apr 2016 21:47:58 +0200
+
+python-fitsio (0.9.8+dfsg-4) unstable; urgency=low
+
+  * Align test data in testAsciiTableWriteRead. Closes: #821132
+
+ -- Ole Streicher <olebole@debian.org>  Thu, 21 Apr 2016 14:48:49 +0200
+
+python-fitsio (0.9.8+dfsg-3) unstable; urgency=low
+
+  * Push Standards-Version to 3.9.8 (no changes)
+  * Fix FTBFS on mips and powerpc
+
+ -- Ole Streicher <olebole@debian.org>  Wed, 20 Apr 2016 11:22:39 +0200
+
+python-fitsio (0.9.8+dfsg-2) unstable; urgency=low
+
+  * Fix CI test call
+  * Fix crash on 32-bit platforms Closes: #821131
+  * Fix Vcs-Git URL
+
+ -- Ole Streicher <olebole@debian.org>  Sat, 16 Apr 2016 22:01:34 +0200
+
+python-fitsio (0.9.8+dfsg-1) unstable; urgency=low
+
+  * Initial release. (Closes: #820811)
+
+ -- Ole Streicher <olebole@debian.org>  Thu, 14 Apr 2016 22:56:03 +0200

diff --git a/compat b/compat
new file mode 100644 (file)
index 0000000..48082f7
--- /dev/null
+++ b/compat
@@ -0,0 +1 @@
+12

diff --git a/control b/control
new file mode 100644 (file)
index 0000000..c9fd408
--- /dev/null
+++ b/control
@@ -0,0 +1,50 @@
+Source: python-fitsio
+Section: python
+Priority: optional
+Maintainer: Debian Astronomy Team <debian-astro-maintainers@lists.alioth.debian.org>
+Uploaders: Ole Streicher <olebole@debian.org>
+Build-Depends: debhelper (>= 12),
+               dh-python,
+               libcfitsio-dev,
+               python-all-dev (>= 2.7),
+               python-numpy,
+               python-setuptools,
+               python3-all-dev,
+               python3-numpy,
+               python3-setuptools
+Standards-Version: 4.3.0
+Homepage: https://github.com/esheldon/fitsio
+Vcs-Git: https://salsa.debian.org/debian-astro-team/python-fitsio.git
+Vcs-Browser: https://salsa.debian.org/debian-astro-team/python-fitsio
+
+Package: python-fitsio
+Architecture: any
+Depends: ${misc:Depends}, ${python:Depends}, ${shlibs:Depends}
+Description: Python 2 library to read from and write to FITS files
+ Fitsio provides an easy to use object-oriented API including
+ providing a Numpy interface to FITS files read from CFITSIO. It
+ allows direct access to the columns of a FITS binary table which can
+ be useful for reading large fits files. Compared to astropy.io.fits,
+ this package is closer to the underlying cfitsio library.
+ .
+ Fitsio also exposes a microlanguage (implemented in CFITSIO) for
+ making efficient SQL-like queries of tables (single tables only
+ though–no joins or anything like that).
+ .
+ This is the Python 2 package.
+
+Package: python3-fitsio
+Architecture: any
+Depends: ${misc:Depends}, ${python3:Depends}, ${shlibs:Depends}
+Description: Python 3 library to read from and write to FITS files
+ Fitsio provides an easy to use object-oriented API including
+ providing a Numpy interface to FITS files read from CFITSIO. It
+ allows direct access to the columns of a FITS binary table which can
+ be useful for reading large fits files. Compared to astropy.io.fits,
+ this package is closer to the underlying cfitsio library.
+ .
+ Fitsio also exposes a microlanguage (implemented in CFITSIO) for
+ making efficient SQL-like queries of tables (single tables only
+ though–no joins or anything like that).
+ .
+ This is the Python 3 package.

diff --git a/copyright b/copyright
new file mode 100644 (file)
index 0000000..ad5ee29
--- /dev/null
+++ b/copyright
@@ -0,0 +1,44 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: fitsio
+Files-Excluded: cfitsio*
+
+Files: *
+Copyright: 2011  Erin Sheldon, BNL.  erin dot sheldon at gmail dot com
+License: GPL-2+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ On Debian GNU/Linux systems, the complete text of the GNU General
+  Public License can be found in `/usr/share/common-licenses/GPL-2'.
+
+Files: debian/*
+Copyright: 2016 Ole Streicher <olebole@debian.org>
+License: BSD-2-Clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ * Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+ .
+ * Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+ LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ POSSIBILITY OF SUCH DAMAGE.

diff --git a/patches/Force-the-use-of-the-system-cfitsio.patch b/patches/Force-the-use-of-the-system-cfitsio.patch
new file mode 100644 (file)
index 0000000..ff53692
--- /dev/null
+++ b/patches/Force-the-use-of-the-system-cfitsio.patch
@@ -0,0 +1,22 @@
+From: Ole Streicher <olebole@debian.org>
+Date: Fri, 15 Jul 2016 08:46:15 +0200
+Subject: Force the use of the system cfitsio
+
+The command line option does not help here since it works only with build_ext.
+---
+ setup.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/setup.py b/setup.py
+index a55ed13..336d838 100644
+--- a/setup.py
++++ b/setup.py
+@@ -30,7 +30,7 @@ class build_ext_subclass(build_ext):
+     cfitsio_dir = 'cfitsio%s' % cfitsio_version
+ 
+     def initialize_options(self):
+-        self.use_system_fitsio = False
++        self.use_system_fitsio = True
+         self.system_fitsio_includedir = None
+         self.system_fitsio_libdir = None
+         build_ext.initialize_options(self)

diff --git a/patches/Mark-failures-that-are-known-to-fail-with-the-original-cf.patch b/patches/Mark-failures-that-are-known-to-fail-with-the-original-cf.patch
new file mode 100644 (file)
index 0000000..b93b9b6
--- /dev/null
+++ b/patches/Mark-failures-that-are-known-to-fail-with-the-original-cf.patch
@@ -0,0 +1,38 @@
+From: Ole Streicher <olebole@debian.org>
+Date: Fri, 15 Jul 2016 08:46:15 +0200
+Subject: Mark failures that are known to fail with the original cfitsio
+
+---
+ fitsio/test.py | 5 +++--
+ 1 file changed, 3 insertions(+), 2 deletions(-)
+
+diff --git a/fitsio/test.py b/fitsio/test.py
+index 32b284e..e8feecd 100644
+--- a/fitsio/test.py
++++ b/fitsio/test.py
+@@ -643,7 +643,7 @@ class TestReadWrite(unittest.TestCase):
+         try:
+             with fitsio.FITS(fname,'rw',clobber=True) as fits:
+                 # note i8 not supported for compressed!
+-                dtypes = ['u1','i1','u2','i2','u4','i4','f4','f8']
++                dtypes = ['u1','i1',     'i2','u4','i4','f4','f8']
+ 
+                 for dtype in dtypes:
+                     data = numpy.arange(5*20,dtype=dtype).reshape(5,20)
+@@ -667,7 +667,7 @@ class TestReadWrite(unittest.TestCase):
+         try:
+             with fitsio.FITS(fname,'rw',clobber=True) as fits:
+                 # note i8 not supported for compressed!
+-                dtypes = ['u1','i1','u2','i2','u4','i4','f4','f8']
++                dtypes = ['u1','i1',     'i2','u4','i4','f4','f8']
+ 
+                 for dtype in dtypes:
+                     data = numpy.arange(5*20,dtype=dtype).reshape(5,20)
+@@ -1683,6 +1683,7 @@ class TestReadWrite(unittest.TestCase):
+             if os.path.exists(fname):
+                 os.remove(fname)
+ 
++    @unittest.skip("bzip2 is not supported with debian cfitsio package")
+     def testBz2Read(self):
+         '''
+         Write a normal .fits file, run bzip2 on it, then read the bz2

diff --git a/patches/series b/patches/series
new file mode 100644 (file)
index 0000000..85c2594
--- /dev/null
+++ b/patches/series
@@ -0,0 +1,2 @@
+Force-the-use-of-the-system-cfitsio.patch
+Mark-failures-that-are-known-to-fail-with-the-original-cf.patch

diff --git a/rules b/rules
new file mode 100755 (executable)
index 0000000..bb36e0b
--- /dev/null
+++ b/rules
@@ -0,0 +1,20 @@
+#!/usr/bin/make -f
+#export DH_VERBOSE=1
+
+PYTHON2:=$(shell pyversions -vr)
+PYTHON3:=$(shell py3versions -vr)
+export PYBUILD_NAME=fitsio
+export http_proxy=127.0.0.1:9
+DEB_HOST_ARCH ?= $(shell dpkg-architecture -qDEB_HOST_ARCH)
+
+%:
+       dh $@ --with python2,python3 --buildsystem=pybuild
+
+override_dh_shlibdeps:
+       dh_shlibdeps
+       dh_numpy
+       dh_numpy3
+
+ifneq (,$(filter $(DEB_HOST_ARCH), armhf))
+override_dh_auto_test:
+endif

diff --git a/source/format b/source/format
new file mode 100644 (file)
index 0000000..163aaf8
--- /dev/null
+++ b/source/format
@@ -0,0 +1 @@
+3.0 (quilt)

diff --git a/tests/control b/tests/control
new file mode 100644 (file)
index 0000000..902c324
--- /dev/null
+++ b/tests/control
@@ -0,0 +1,7 @@
+Test-Command: cd $ADTTMP && python -c "import fitsio; exit(fitsio.test.test())"
+Depends: python-fitsio
+Restrictions: allow-stderr
+
+Test-Command: cd $ADTTMP && python3 -c "import fitsio; exit(fitsio.test.test())"
+Depends: python3-fitsio
+Restrictions: allow-stderr

diff --git a/upstream/metadata b/upstream/metadata
new file mode 100644 (file)
index 0000000..0fc6e5d
--- /dev/null
+++ b/upstream/metadata
@@ -0,0 +1,3 @@
+Bug-Database: https://github.com/esheldon/fitsio/issues
+Name: fitsio
+Repository: https://github.com/esheldon/fitsio

diff --git a/watch b/watch
new file mode 100644 (file)
index 0000000..ee6449d
--- /dev/null
+++ b/watch
@@ -0,0 +1,3 @@
+version=3
+opts=dversionmangle=s/\+dfsg//,uversionmangle=s/(rc|a|b|c)/~$1/,repacksuffix=+dfsg \
+https://pypi.debian.net/fitsio/fitsio-([0-9].+)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))