dgit.raspbian.org Git - python-pysam.git/commit

author	Afif Elghraoui <afif@ghraoui.name>
	Sun, 19 Jun 2016 21:17:37 +0000 (14:17 -0700)
committer	Afif Elghraoui <afif@ghraoui.name>
	Sun, 19 Jun 2016 21:17:37 +0000 (14:17 -0700)
commit	f4708100096e3853ab9749dbb378225683d04be6
tree	20d72b913ab463358f2d5ea8a36c851ca5a16077	tree \| snapshot
parent	364e45ae3dbbca99801346c2e0bb976c5c8d2299	commit \| diff

Imported Upstream version 0.9.1+ds

194 files changed:

INSTALL		diff \| blob \| history
bcftools/bcftools.h		diff \| blob \| history
bcftools/consensus.c		diff \| blob \| history
bcftools/consensus.c.pysam.c		diff \| blob \| history
bcftools/convert.c.pysam.c		diff \| blob \| history
bcftools/em.c.pysam.c		diff \| blob \| history
bcftools/filter.c.pysam.c		diff \| blob \| history
bcftools/khash_str2str.h		diff \| blob \| history
bcftools/main.c		diff \| blob \| history
bcftools/main.c.pysam.c		diff \| blob \| history
bcftools/mcall.c.pysam.c		diff \| blob \| history
bcftools/ploidy.c		diff \| blob \| history
bcftools/ploidy.c.pysam.c		diff \| blob \| history
bcftools/prob1.c.pysam.c		diff \| blob \| history
bcftools/pysam.h		diff \| blob \| history
bcftools/tabix.c.pysam.c		diff \| blob \| history
bcftools/vcfannotate.c		diff \| blob \| history
bcftools/vcfannotate.c.pysam.c		diff \| blob \| history
bcftools/vcfcall.c		diff \| blob \| history
bcftools/vcfcall.c.pysam.c		diff \| blob \| history
bcftools/vcfcnv.c.pysam.c		diff \| blob \| history
bcftools/vcfconcat.c		diff \| blob \| history
bcftools/vcfconcat.c.pysam.c		diff \| blob \| history
bcftools/vcfconvert.c		diff \| blob \| history
bcftools/vcfconvert.c.pysam.c		diff \| blob \| history
bcftools/vcffilter.c		diff \| blob \| history
bcftools/vcffilter.c.pysam.c		diff \| blob \| history
bcftools/vcfgtcheck.c.pysam.c		diff \| blob \| history
bcftools/vcfindex.c		diff \| blob \| history
bcftools/vcfindex.c.pysam.c		diff \| blob \| history
bcftools/vcfisec.c		diff \| blob \| history
bcftools/vcfisec.c.pysam.c		diff \| blob \| history
bcftools/vcfmerge.c		diff \| blob \| history
bcftools/vcfmerge.c.pysam.c		diff \| blob \| history
bcftools/vcfnorm.c		diff \| blob \| history
bcftools/vcfnorm.c.pysam.c		diff \| blob \| history
bcftools/vcfplugin.c		diff \| blob \| history
bcftools/vcfplugin.c.pysam.c		diff \| blob \| history
bcftools/vcfquery.c.pysam.c		diff \| blob \| history
bcftools/vcfroh.c		diff \| blob \| history
bcftools/vcfroh.c.pysam.c		diff \| blob \| history
bcftools/vcfsom.c.pysam.c		diff \| blob \| history
bcftools/vcfstats.c.pysam.c		diff \| blob \| history
bcftools/vcfview.c		diff \| blob \| history
bcftools/vcfview.c.pysam.c		diff \| blob \| history
bcftools/version.c.pysam.c		diff \| blob \| history
bcftools/version.h		diff \| blob \| history
doc/faq.rst		diff \| blob \| history
doc/glossary.rst		diff \| blob \| history
doc/installation.rst		diff \| blob \| history
doc/release.rst		diff \| blob \| history
import.py		diff \| blob \| history
pysam/__init__.py		diff \| blob \| history
pysam/calignedsegment.pyx		diff \| blob \| history
pysam/calignmentfile.pxd		diff \| blob \| history
pysam/calignmentfile.pyx		diff \| blob \| history
pysam/cbcf.pyx		diff \| blob \| history
pysam/cfaidx.pxd		diff \| blob \| history
pysam/cfaidx.pyx		diff \| blob \| history
pysam/chtslib.pxd		diff \| blob \| history
pysam/ctabix.pxd		diff \| blob \| history
pysam/ctabix.pyx		diff \| blob \| history
pysam/ctabixproxies.pyx		diff \| blob \| history
pysam/cutils.pxd		diff \| blob \| history
pysam/cutils.pyx		diff \| blob \| history
pysam/cvcf.pyx		diff \| blob \| history
pysam/pysam_stream.h		diff \| blob \| history
pysam/pysam_util.c		diff \| blob \| history
pysam/pysam_util.h		diff \| blob \| history
pysam/tabix_util.c		diff \| blob \| history
pysam/utils.py		diff \| blob \| history
pysam/version.py		diff \| blob \| history
run_tests_travis.sh		diff \| blob \| history
samtools/bam.c		diff \| blob \| history
samtools/bam.c.pysam.c		diff \| blob \| history
samtools/bam.h		diff \| blob \| history
samtools/bam2bcf.c		diff \| blob \| history
samtools/bam2bcf.c.pysam.c		diff \| blob \| history
samtools/bam2bcf_indel.c		diff \| blob \| history
samtools/bam2bcf_indel.c.pysam.c		diff \| blob \| history
samtools/bam2depth.c		diff \| blob \| history
samtools/bam2depth.c.pysam.c		diff \| blob \| history
samtools/bam_addrprg.c		diff \| blob \| history
samtools/bam_addrprg.c.pysam.c		diff \| blob \| history
samtools/bam_aux.c		diff \| blob \| history
samtools/bam_aux.c.pysam.c		diff \| blob \| history
samtools/bam_cat.c		diff \| blob \| history
samtools/bam_cat.c.pysam.c		diff \| blob \| history
samtools/bam_color.c		diff \| blob \| history
samtools/bam_color.c.pysam.c		diff \| blob \| history
samtools/bam_flags.c		diff \| blob \| history
samtools/bam_flags.c.pysam.c		diff \| blob \| history
samtools/bam_import.c		diff \| blob \| history
samtools/bam_import.c.pysam.c		diff \| blob \| history
samtools/bam_index.c		diff \| blob \| history
samtools/bam_index.c.pysam.c		diff \| blob \| history
samtools/bam_lpileup.c		diff \| blob \| history
samtools/bam_lpileup.c.pysam.c		diff \| blob \| history
samtools/bam_mate.c		diff \| blob \| history
samtools/bam_mate.c.pysam.c		diff \| blob \| history
samtools/bam_md.c		diff \| blob \| history
samtools/bam_md.c.pysam.c		diff \| blob \| history
samtools/bam_plbuf.c		diff \| blob \| history
samtools/bam_plbuf.c.pysam.c		diff \| blob \| history
samtools/bam_plcmd.c		diff \| blob \| history
samtools/bam_plcmd.c.pysam.c		diff \| blob \| history
samtools/bam_quickcheck.c		diff \| blob \| history
samtools/bam_quickcheck.c.pysam.c		diff \| blob \| history
samtools/bam_reheader.c		diff \| blob \| history
samtools/bam_reheader.c.pysam.c		diff \| blob \| history
samtools/bam_rmdup.c		diff \| blob \| history
samtools/bam_rmdup.c.pysam.c		diff \| blob \| history
samtools/bam_rmdupse.c		diff \| blob \| history
samtools/bam_rmdupse.c.pysam.c		diff \| blob \| history
samtools/bam_sort.c		diff \| blob \| history
samtools/bam_sort.c.pysam.c		diff \| blob \| history
samtools/bam_split.c		diff \| blob \| history
samtools/bam_split.c.pysam.c		diff \| blob \| history
samtools/bam_stat.c		diff \| blob \| history
samtools/bam_stat.c.pysam.c		diff \| blob \| history
samtools/bam_tview.c		diff \| blob \| history
samtools/bam_tview.c.pysam.c		diff \| blob \| history
samtools/bam_tview_curses.c.pysam.c		diff \| blob \| history
samtools/bam_tview_html.c		diff \| blob \| history
samtools/bam_tview_html.c.pysam.c		diff \| blob \| history
samtools/bamshuf.c		diff \| blob \| history
samtools/bamshuf.c.pysam.c		diff \| blob \| history
samtools/bamtk.c		diff \| blob \| history
samtools/bamtk.c.pysam.c		diff \| blob \| history
samtools/bedcov.c		diff \| blob \| history
samtools/bedcov.c.pysam.c		diff \| blob \| history
samtools/bedidx.c		diff \| blob \| history
samtools/bedidx.c.pysam.c		diff \| blob \| history
samtools/cut_target.c		diff \| blob \| history
samtools/cut_target.c.pysam.c		diff \| blob \| history
samtools/dict.c		diff \| blob \| history
samtools/dict.c.pysam.c		diff \| blob \| history
samtools/errmod.c		diff \| blob \| history
samtools/errmod.c.pysam.c		diff \| blob \| history
samtools/faidx.c		diff \| blob \| history
samtools/faidx.c.pysam.c		diff \| blob \| history
samtools/kprobaln.c		diff \| blob \| history
samtools/kprobaln.c.pysam.c		diff \| blob \| history
samtools/misc/ace2sam.c		diff \| blob \| history
samtools/misc/ace2sam.c.pysam.c		diff \| blob \| history
samtools/padding.c		diff \| blob \| history
samtools/padding.c.pysam.c		diff \| blob \| history
samtools/phase.c		diff \| blob \| history
samtools/phase.c.pysam.c		diff \| blob \| history
samtools/pysam.h		diff \| blob \| history
samtools/sam.c		diff \| blob \| history
samtools/sam.c.pysam.c		diff \| blob \| history
samtools/sam_header.c		diff \| blob \| history
samtools/sam_header.c.pysam.c		diff \| blob \| history
samtools/sam_opts.c		diff \| blob \| history
samtools/sam_opts.c.pysam.c		diff \| blob \| history
samtools/sam_view.c		diff \| blob \| history
samtools/sam_view.c.pysam.c		diff \| blob \| history
samtools/sample.c		diff \| blob \| history
samtools/sample.c.pysam.c		diff \| blob \| history
samtools/stats.c		diff \| blob \| history
samtools/stats.c.pysam.c		diff \| blob \| history
samtools/stats_isize.c		diff \| blob \| history
samtools/stats_isize.c.pysam.c		diff \| blob \| history
samtools/test/merge/test_bam_translate.c		diff \| blob \| history
samtools/test/merge/test_bam_translate.c.pysam.c		diff \| blob \| history
samtools/test/merge/test_rtrans_build.c		diff \| blob \| history
samtools/test/merge/test_rtrans_build.c.pysam.c		diff \| blob \| history
samtools/test/merge/test_trans_tbl_init.c		diff \| blob \| history
samtools/test/merge/test_trans_tbl_init.c.pysam.c		diff \| blob \| history
samtools/test/split/test_count_rg.c		diff \| blob \| history
samtools/test/split/test_count_rg.c.pysam.c		diff \| blob \| history
samtools/test/split/test_expand_format_string.c		diff \| blob \| history
samtools/test/split/test_expand_format_string.c.pysam.c		diff \| blob \| history
samtools/test/split/test_filter_header_rg.c		diff \| blob \| history
samtools/test/split/test_filter_header_rg.c.pysam.c		diff \| blob \| history
samtools/test/split/test_parse_args.c		diff \| blob \| history
samtools/test/split/test_parse_args.c.pysam.c		diff \| blob \| history
samtools/test/test.c		diff \| blob \| history
samtools/test/test.c.pysam.c		diff \| blob \| history
samtools/test/tview/test_get_rg_sample.c		diff \| blob \| history
samtools/test/tview/test_get_rg_sample.c.pysam.c		diff \| blob \| history
samtools/version.h		diff \| blob \| history
setup.py		diff \| blob \| history
tests/AlignedSegment_test.py		diff \| blob \| history
tests/AlignmentFile_test.py		diff \| blob \| history
tests/TestUtils.py		diff \| blob \| history
tests/VariantFile_test.py		diff \| blob \| history
tests/cbcf_data/example_vcf42.vcf		diff \| blob \| history
tests/faidx_test.py		diff \| blob \| history
tests/pysam_data/Makefile		diff \| blob \| history
tests/samtools_test.py		diff \| blob \| history
tests/tabix_test.py		diff \| blob \| history
tests/test_samtools_python.py	[new file with mode: 0644]	blob

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