dgit.raspbian.org Git - python-pysam.git/commit

]> dgit.raspbian.org Git - python-pysam.git/commit

author	Étienne Mollier <emollier@debian.org>
	Wed, 5 Feb 2025 20:00:32 +0000 (21:00 +0100)
committer	Étienne Mollier <emollier@debian.org>
	Wed, 5 Feb 2025 20:00:32 +0000 (21:00 +0100)
commit	f09de47a85e55f8a6e872feae2ac3f3b7d59e2a2
tree	ec96ba5e9603ad0a27f12247764c4db86d47da64	tree \| snapshot
parent	c78787bab14a9327e1fb5b3200738ff74db3a267	commit \| diff

New upstream version 0.23.0+ds

195 files changed:

.cirrus.yml		diff \| blob \| history
AUTHORS		diff \| blob \| history
INSTALL		diff \| blob \| history
MANIFEST.in		diff \| blob \| history
NEWS		diff \| blob \| history
README.rst		diff \| blob \| history
bcftools/HMM.h		diff \| blob \| history
bcftools/LICENSE		diff \| blob \| history
bcftools/abuf.c		diff \| blob \| history
bcftools/abuf.c.pysam.c		diff \| blob \| history
bcftools/bam2bcf.c		diff \| blob \| history
bcftools/bam2bcf.c.pysam.c		diff \| blob \| history
bcftools/bam2bcf.h		diff \| blob \| history
bcftools/bam2bcf_edlib.c	[new file with mode: 0644]	blob
bcftools/bam2bcf_edlib.c.pysam.c	[new file with mode: 0644]	blob
bcftools/bam2bcf_iaux.c		diff \| blob \| history
bcftools/bam2bcf_iaux.c.pysam.c		diff \| blob \| history
bcftools/bam2bcf_indel.c		diff \| blob \| history
bcftools/bam2bcf_indel.c.pysam.c		diff \| blob \| history
bcftools/bcftools.h		diff \| blob \| history
bcftools/call.h		diff \| blob \| history
bcftools/consensus.c		diff \| blob \| history
bcftools/consensus.c.pysam.c		diff \| blob \| history
bcftools/convert.c		diff \| blob \| history
bcftools/convert.c.pysam.c		diff \| blob \| history
bcftools/convert.h		diff \| blob \| history
bcftools/csq.c		diff \| blob \| history
bcftools/csq.c.pysam.c		diff \| blob \| history
bcftools/edlib.c	[new file with mode: 0644]	blob
bcftools/edlib.c.pysam.c	[new file with mode: 0644]	blob
bcftools/edlib.h	[new file with mode: 0644]	blob
bcftools/filter.c		diff \| blob \| history
bcftools/filter.c.pysam.c		diff \| blob \| history
bcftools/filter.h		diff \| blob \| history
bcftools/gff.c		diff \| blob \| history
bcftools/gff.c.pysam.c		diff \| blob \| history
bcftools/gff.h		diff \| blob \| history
bcftools/gvcf.c		diff \| blob \| history
bcftools/gvcf.c.pysam.c		diff \| blob \| history
bcftools/main.c		diff \| blob \| history
bcftools/main.c.pysam.c		diff \| blob \| history
bcftools/mcall.c		diff \| blob \| history
bcftools/mcall.c.pysam.c		diff \| blob \| history
bcftools/mpileup.c		diff \| blob \| history
bcftools/mpileup.c.pysam.c		diff \| blob \| history
bcftools/read_consensus.c		diff \| blob \| history
bcftools/read_consensus.c.pysam.c		diff \| blob \| history
bcftools/regidx.h		diff \| blob \| history
bcftools/reheader.c		diff \| blob \| history
bcftools/reheader.c.pysam.c		diff \| blob \| history
bcftools/str_finder.c		diff \| blob \| history
bcftools/str_finder.c.pysam.c		diff \| blob \| history
bcftools/str_finder.h		diff \| blob \| history
bcftools/variantkey.h		diff \| blob \| history
bcftools/vcfannotate.c		diff \| blob \| history
bcftools/vcfannotate.c.pysam.c		diff \| blob \| history
bcftools/vcfbuf.c		diff \| blob \| history
bcftools/vcfbuf.c.pysam.c		diff \| blob \| history
bcftools/vcfbuf.h		diff \| blob \| history
bcftools/vcfcall.c		diff \| blob \| history
bcftools/vcfcall.c.pysam.c		diff \| blob \| history
bcftools/vcfcnv.c		diff \| blob \| history
bcftools/vcfcnv.c.pysam.c		diff \| blob \| history
bcftools/vcfconcat.c		diff \| blob \| history
bcftools/vcfconcat.c.pysam.c		diff \| blob \| history
bcftools/vcfconvert.c		diff \| blob \| history
bcftools/vcfconvert.c.pysam.c		diff \| blob \| history
bcftools/vcffilter.c		diff \| blob \| history
bcftools/vcffilter.c.pysam.c		diff \| blob \| history
bcftools/vcfgtcheck.c		diff \| blob \| history
bcftools/vcfgtcheck.c.pysam.c		diff \| blob \| history
bcftools/vcfhead.c		diff \| blob \| history
bcftools/vcfhead.c.pysam.c		diff \| blob \| history
bcftools/vcfindex.c		diff \| blob \| history
bcftools/vcfindex.c.pysam.c		diff \| blob \| history
bcftools/vcfisec.c		diff \| blob \| history
bcftools/vcfisec.c.pysam.c		diff \| blob \| history
bcftools/vcfmerge.c		diff \| blob \| history
bcftools/vcfmerge.c.pysam.c		diff \| blob \| history
bcftools/vcfnorm.c		diff \| blob \| history
bcftools/vcfnorm.c.pysam.c		diff \| blob \| history
bcftools/vcfplugin.c		diff \| blob \| history
bcftools/vcfplugin.c.pysam.c		diff \| blob \| history
bcftools/vcfquery.c		diff \| blob \| history
bcftools/vcfquery.c.pysam.c		diff \| blob \| history
bcftools/vcfroh.c		diff \| blob \| history
bcftools/vcfroh.c.pysam.c		diff \| blob \| history
bcftools/vcfsom.c		diff \| blob \| history
bcftools/vcfsom.c.pysam.c		diff \| blob \| history
bcftools/vcfsort.c		diff \| blob \| history
bcftools/vcfsort.c.pysam.c		diff \| blob \| history
bcftools/vcfstats.c		diff \| blob \| history
bcftools/vcfstats.c.pysam.c		diff \| blob \| history
bcftools/vcfview.c		diff \| blob \| history
bcftools/vcfview.c.pysam.c		diff \| blob \| history
bcftools/version.c		diff \| blob \| history
bcftools/version.c.pysam.c		diff \| blob \| history
bcftools/version.sh		diff \| blob \| history
devtools/check-platform.sh	[new file with mode: 0755]	blob
devtools/environment-dev.yaml		diff \| blob \| history
devtools/import.py		diff \| blob \| history
doc/conf.py		diff \| blob \| history
doc/developer.rst		diff \| blob \| history
doc/faq.rst		diff \| blob \| history
doc/index.rst		diff \| blob \| history
doc/installation.rst		diff \| blob \| history
doc/usage.rst		diff \| blob \| history
pysam/bcftools.py		diff \| blob \| history
pysam/libcalignedsegment.pyi		diff \| blob \| history
pysam/libcalignedsegment.pyx		diff \| blob \| history
pysam/libcalignmentfile.pyi		diff \| blob \| history
pysam/libcbcf.pyi		diff \| blob \| history
pysam/libcbcf.pyx		diff \| blob \| history
pysam/libcbgzf.pxd	[new file with mode: 0644]	blob
pysam/libcbgzf.pyx		diff \| blob \| history
pysam/libchtslib.pxd		diff \| blob \| history
pysam/libchtslib.pyi		diff \| blob \| history
pysam/libchtslib.pyx		diff \| blob \| history
pysam/libctabix.pyi		diff \| blob \| history
pysam/libcutils.pyx		diff \| blob \| history
pysam/samtools.py		diff \| blob \| history
pysam/utils.py		diff \| blob \| history
pysam/version.h		diff \| blob \| history
pysam/version.py		diff \| blob \| history
samtools/LICENSE		diff \| blob \| history
samtools/README		diff \| blob \| history
samtools/amplicon_stats.c		diff \| blob \| history
samtools/amplicon_stats.c.pysam.c		diff \| blob \| history
samtools/bam2depth.c		diff \| blob \| history
samtools/bam2depth.c.pysam.c		diff \| blob \| history
samtools/bam_ampliconclip.c		diff \| blob \| history
samtools/bam_ampliconclip.c.pysam.c		diff \| blob \| history
samtools/bam_ampliconclip.h		diff \| blob \| history
samtools/bam_cat.c		diff \| blob \| history
samtools/bam_cat.c.pysam.c		diff \| blob \| history
samtools/bam_consensus.c		diff \| blob \| history
samtools/bam_consensus.c.pysam.c		diff \| blob \| history
samtools/bam_fastq.c		diff \| blob \| history
samtools/bam_fastq.c.pysam.c		diff \| blob \| history
samtools/bam_import.c		diff \| blob \| history
samtools/bam_import.c.pysam.c		diff \| blob \| history
samtools/bam_index.c		diff \| blob \| history
samtools/bam_index.c.pysam.c		diff \| blob \| history
samtools/bam_markdup.c		diff \| blob \| history
samtools/bam_markdup.c.pysam.c		diff \| blob \| history
samtools/bam_mate.c		diff \| blob \| history
samtools/bam_mate.c.pysam.c		diff \| blob \| history
samtools/bam_md.c		diff \| blob \| history
samtools/bam_md.c.pysam.c		diff \| blob \| history
samtools/bam_plbuf.h		diff \| blob \| history
samtools/bam_plcmd.c		diff \| blob \| history
samtools/bam_plcmd.c.pysam.c		diff \| blob \| history
samtools/bam_sort.c		diff \| blob \| history
samtools/bam_sort.c.pysam.c		diff \| blob \| history
samtools/bam_split.c		diff \| blob \| history
samtools/bam_split.c.pysam.c		diff \| blob \| history
samtools/bamtk.c		diff \| blob \| history
samtools/bamtk.c.pysam.c		diff \| blob \| history
samtools/bedcov.c		diff \| blob \| history
samtools/bedcov.c.pysam.c		diff \| blob \| history
samtools/bedidx.c		diff \| blob \| history
samtools/bedidx.c.pysam.c		diff \| blob \| history
samtools/coverage.c		diff \| blob \| history
samtools/coverage.c.pysam.c		diff \| blob \| history
samtools/faidx.c		diff \| blob \| history
samtools/faidx.c.pysam.c		diff \| blob \| history
samtools/lz4/lz4.c		diff \| blob \| history
samtools/lz4/lz4.c.pysam.c		diff \| blob \| history
samtools/phase.c		diff \| blob \| history
samtools/phase.c.pysam.c		diff \| blob \| history
samtools/reset.c		diff \| blob \| history
samtools/reset.c.pysam.c		diff \| blob \| history
samtools/sam_utils.c		diff \| blob \| history
samtools/sam_utils.c.pysam.c		diff \| blob \| history
samtools/sam_view.c		diff \| blob \| history
samtools/sam_view.c.pysam.c		diff \| blob \| history
samtools/stats.c		diff \| blob \| history
samtools/stats.c.pysam.c		diff \| blob \| history
samtools/tmp_file.c		diff \| blob \| history
samtools/tmp_file.c.pysam.c		diff \| blob \| history
samtools/version.sh		diff \| blob \| history
setup.py		diff \| blob \| history
tests/AlignedSegment_test.py		diff \| blob \| history
tests/AlignmentFileHeader_test.py		diff \| blob \| history
tests/TestUtils.py		diff \| blob \| history
tests/VariantFile_bench.py		diff \| blob \| history
tests/VariantRecord_test.py		diff \| blob \| history
tests/cbcf_data/Makefile		diff \| blob \| history
tests/pysam_data/MM-chebi.sam		diff \| blob \| history
tests/pysam_data/MM-explicit.sam	[new file with mode: 0644]	blob
tests/pysam_data/MM-multi.sam		diff \| blob \| history
tests/pysam_data/Makefile		diff \| blob \| history
tests/samtools_test.py		diff \| blob \| history
tests/tabix_data/Makefile		diff \| blob \| history
tests/typechecking_test.py	[new file with mode: 0644]	blob

Unnamed repository; edit this file 'description' to name the repository.

RSS Atom