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Import htslib_1.3.2.orig.tar.gz
authorAndreas Tille <tille@debian.org>
Fri, 4 Nov 2016 11:58:19 +0000 (11:58 +0000)
committerAndreas Tille <tille@debian.org>
Fri, 4 Nov 2016 11:58:19 +0000 (11:58 +0000)
commitdfb84a88d36266546146f8c23f825e69aba51332
treef56a9c764f8e258618eda957e7253352842d538ctree | snapshot
Import htslib_1.3.2.orig.tar.gz

[dgit import orig htslib_1.3.2.orig.tar.gz]
164 files changed:
INSTALL [new file with mode: 0644] blob
LICENSE [new file with mode: 0644] blob
Makefile [new file with mode: 0644] blob
NEWS [new file with mode: 0644] blob
README [new file with mode: 0644] blob
bgzf.c [new file with mode: 0644] blob
bgzip.c [new file with mode: 0644] blob
config.h.in [new file with mode: 0644] blob
config.mk.in [new file with mode: 0644] blob
configure.ac [new file with mode: 0644] blob
cram/cram.h [new file with mode: 0644] blob
cram/cram_codecs.c [new file with mode: 0644] blob
cram/cram_codecs.h [new file with mode: 0644] blob
cram/cram_decode.c [new file with mode: 0644] blob
cram/cram_decode.h [new file with mode: 0644] blob
cram/cram_encode.c [new file with mode: 0644] blob
cram/cram_encode.h [new file with mode: 0644] blob
cram/cram_external.c [new file with mode: 0644] blob
cram/cram_index.c [new file with mode: 0644] blob
cram/cram_index.h [new file with mode: 0644] blob
cram/cram_io.c [new file with mode: 0644] blob
cram/cram_io.h [new file with mode: 0644] blob
cram/cram_samtools.c [new file with mode: 0644] blob
cram/cram_samtools.h [new file with mode: 0644] blob
cram/cram_stats.c [new file with mode: 0644] blob
cram/cram_stats.h [new file with mode: 0644] blob
cram/cram_structs.h [new file with mode: 0644] blob
cram/files.c [new file with mode: 0644] blob
cram/mFILE.c [new file with mode: 0644] blob
cram/mFILE.h [new file with mode: 0644] blob
cram/misc.h [new file with mode: 0644] blob
cram/open_trace_file.c [new file with mode: 0644] blob
cram/open_trace_file.h [new file with mode: 0644] blob
cram/os.h [new file with mode: 0644] blob
cram/pooled_alloc.c [new file with mode: 0644] blob
cram/pooled_alloc.h [new file with mode: 0644] blob
cram/rANS_byte.h [new file with mode: 0644] blob
cram/rANS_static.c [new file with mode: 0644] blob
cram/rANS_static.h [new file with mode: 0644] blob
cram/sam_header.c [new file with mode: 0644] blob
cram/sam_header.h [new file with mode: 0644] blob
cram/string_alloc.c [new file with mode: 0644] blob
cram/string_alloc.h [new file with mode: 0644] blob
cram/thread_pool.c [new file with mode: 0644] blob
cram/thread_pool.h [new file with mode: 0644] blob
cram/vlen.c [new file with mode: 0644] blob
cram/vlen.h [new file with mode: 0644] blob
cram/zfio.c [new file with mode: 0644] blob
cram/zfio.h [new file with mode: 0644] blob
faidx.5 [new file with mode: 0644] blob
faidx.c [new file with mode: 0644] blob
hfile.c [new file with mode: 0644] blob
hfile_internal.h [new file with mode: 0644] blob
hfile_irods.c [new file with mode: 0644] blob
hfile_libcurl.c [new file with mode: 0644] blob
hfile_net.c [new file with mode: 0644] blob
hts.c [new file with mode: 0644] blob
hts_internal.h [new file with mode: 0644] blob
htsfile.1 [new file with mode: 0644] blob
htsfile.c [new file with mode: 0644] blob
htslib.mk [new file with mode: 0644] blob
htslib.pc.in [new file with mode: 0644] blob
htslib/bgzf.h [new file with mode: 0644] blob
htslib/cram.h [new file with mode: 0644] blob
htslib/faidx.h [new file with mode: 0644] blob
htslib/hfile.h [new file with mode: 0644] blob
htslib/hts.h [new file with mode: 0644] blob
htslib/hts_defs.h [new file with mode: 0644] blob
htslib/kbitset.h [new file with mode: 0644] blob
htslib/kfunc.h [new file with mode: 0644] blob
htslib/khash.h [new file with mode: 0644] blob
htslib/khash_str2int.h [new file with mode: 0644] blob
htslib/klist.h [new file with mode: 0644] blob
htslib/knetfile.h [new file with mode: 0644] blob
htslib/kseq.h [new file with mode: 0644] blob
htslib/ksort.h [new file with mode: 0644] blob
htslib/kstring.h [new file with mode: 0644] blob
htslib/regidx.h [new file with mode: 0644] blob
htslib/sam.h [new file with mode: 0644] blob
htslib/synced_bcf_reader.h [new file with mode: 0644] blob
htslib/tbx.h [new file with mode: 0644] blob
htslib/vcf.h [new file with mode: 0644] blob
htslib/vcf_sweep.h [new file with mode: 0644] blob
htslib/vcfutils.h [new file with mode: 0644] blob
htslib_vars.mk [new file with mode: 0644] blob
kfunc.c [new file with mode: 0644] blob
knetfile.c [new file with mode: 0644] blob
kstring.c [new file with mode: 0644] blob
md5.c [new file with mode: 0644] blob
plugin.c [new file with mode: 0644] blob
regidx.c [new file with mode: 0644] blob
sam.5 [new file with mode: 0644] blob
sam.c [new file with mode: 0644] blob
synced_bcf_reader.c [new file with mode: 0644] blob
tabix.1 [new file with mode: 0644] blob
tabix.c [new file with mode: 0644] blob
tbx.c [new file with mode: 0644] blob
test/aux#aux_java.cram [new file with mode: 0644] blob
test/auxf#values.sam [new file with mode: 0644] blob
test/auxf.fa [new file with mode: 0644] blob
test/auxf.fa.fai [new file with mode: 0644] blob
test/c1#bounds.sam [new file with mode: 0644] blob
test/c1#clip.sam [new file with mode: 0644] blob
test/c1#noseq.sam [new file with mode: 0644] blob
test/c1#pad1.sam [new file with mode: 0644] blob
test/c1#pad2.sam [new file with mode: 0644] blob
test/c1#pad3.sam [new file with mode: 0644] blob
test/c1#unknown.sam [new file with mode: 0644] blob
test/c1.fa [new file with mode: 0644] blob
test/c1.fa.fai [new file with mode: 0644] blob
test/c2#pad.sam [new file with mode: 0644] blob
test/c2.fa [new file with mode: 0644] blob
test/c2.fa.fai [new file with mode: 0644] blob
test/ce#1.sam [new file with mode: 0644] blob
test/ce#2.sam [new file with mode: 0644] blob
test/ce#5.sam [new file with mode: 0644] blob
test/ce#5b.sam [new file with mode: 0644] blob
test/ce#5b_java.cram [new file with mode: 0644] blob
test/ce#large_seq.sam [new file with mode: 0644] blob
test/ce#supp.sam [new file with mode: 0644] blob
test/ce#tag_depadded.sam [new file with mode: 0644] blob
test/ce#tag_padded.sam [new file with mode: 0644] blob
test/ce#unmap.sam [new file with mode: 0644] blob
test/ce#unmap1.sam [new file with mode: 0644] blob
test/ce#unmap2.sam [new file with mode: 0644] blob
test/ce.fa [new file with mode: 0644] blob
test/ce.fa.fai [new file with mode: 0644] blob
test/compare_sam.pl [new file with mode: 0755] blob
test/cross_validate.sh [new file with mode: 0755] blob
test/faidx.fa [new file with mode: 0644] blob
test/fieldarith.c [new file with mode: 0644] blob
test/fieldarith.sam [new file with mode: 0644] blob
test/formatcols.vcf [new file with mode: 0644] blob
test/hfile.c [new file with mode: 0644] blob
test/noroundtrip-out.vcf [new file with mode: 0644] blob
test/noroundtrip.vcf [new file with mode: 0644] blob
test/sam.c [new file with mode: 0644] blob
test/test-regidx.c [new file with mode: 0644] blob
test/test-vcf-api.c [new file with mode: 0644] blob
test/test-vcf-api.out [new file with mode: 0644] blob
test/test-vcf-hdr-in.vcf [new file with mode: 0644] blob
test/test-vcf-hdr.out [new file with mode: 0644] blob
test/test-vcf-sweep.c [new file with mode: 0644] blob
test/test-vcf-sweep.out [new file with mode: 0644] blob
test/test.pl [new file with mode: 0755] blob
test/test_view.c [new file with mode: 0644] blob
test/xx#blank.sam [new file with mode: 0644] blob
test/xx#large_aux.sam [new file with mode: 0644] blob
test/xx#large_aux2.sam [new file with mode: 0644] blob
test/xx#large_aux_java.cram [new file with mode: 0644] blob
test/xx#minimal.sam [new file with mode: 0644] blob
test/xx#pair.sam [new file with mode: 0644] blob
test/xx#repeated.sam [new file with mode: 0644] blob
test/xx#rg.sam [new file with mode: 0644] blob
test/xx#tlen.sam [new file with mode: 0644] blob
test/xx#tlen2.sam [new file with mode: 0644] blob
test/xx#triplet.sam [new file with mode: 0644] blob
test/xx#unsorted.sam [new file with mode: 0644] blob
test/xx.fa [new file with mode: 0644] blob
test/xx.fa.fai [new file with mode: 0644] blob
vcf.5 [new file with mode: 0644] blob
vcf.c [new file with mode: 0644] blob
vcf_sweep.c [new file with mode: 0644] blob
vcfutils.c [new file with mode: 0644] blob
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