dgit.raspbian.org Git - python-pysam.git/commit

author	Andreas Tille <tille@debian.org>
	Tue, 7 Dec 2021 08:21:05 +0000 (09:21 +0100)
committer	Andreas Tille <tille@debian.org>
	Tue, 7 Dec 2021 08:21:05 +0000 (09:21 +0100)
commit	b9d055f3408a398a66a7581be362596073d52690
tree	5022b8307fb4eab1f1f8b7d0d5c491d16d82ad4e	tree \| snapshot
parent	0756fadda6074d56d45d8f40268f1342947bb217	commit \| diff

New upstream version 0.18.0+ds

135 files changed:

.github/workflows/ci.yaml		diff \| blob \| history
.github/workflows/release.yaml		diff \| blob \| history
Containerfile	[new file with mode: 0644]	blob
README.rst		diff \| blob \| history
bcftools/abuf.c		diff \| blob \| history
bcftools/abuf.c.pysam.c		diff \| blob \| history
bcftools/bam2bcf.c		diff \| blob \| history
bcftools/bam2bcf.c.pysam.c		diff \| blob \| history
bcftools/bam2bcf.h		diff \| blob \| history
bcftools/bam2bcf_indel.c		diff \| blob \| history
bcftools/bam2bcf_indel.c.pysam.c		diff \| blob \| history
bcftools/bcftools.h		diff \| blob \| history
bcftools/consensus.c		diff \| blob \| history
bcftools/consensus.c.pysam.c		diff \| blob \| history
bcftools/convert.c		diff \| blob \| history
bcftools/convert.c.pysam.c		diff \| blob \| history
bcftools/convert.h		diff \| blob \| history
bcftools/csq.c		diff \| blob \| history
bcftools/csq.c.pysam.c		diff \| blob \| history
bcftools/mcall.c		diff \| blob \| history
bcftools/mcall.c.pysam.c		diff \| blob \| history
bcftools/mpileup.c		diff \| blob \| history
bcftools/mpileup.c.pysam.c		diff \| blob \| history
bcftools/vcfannotate.c		diff \| blob \| history
bcftools/vcfannotate.c.pysam.c		diff \| blob \| history
bcftools/vcfcall.c		diff \| blob \| history
bcftools/vcfcall.c.pysam.c		diff \| blob \| history
bcftools/vcfcnv.c		diff \| blob \| history
bcftools/vcfcnv.c.pysam.c		diff \| blob \| history
bcftools/vcfconcat.c		diff \| blob \| history
bcftools/vcfconcat.c.pysam.c		diff \| blob \| history
bcftools/vcfconvert.c		diff \| blob \| history
bcftools/vcfconvert.c.pysam.c		diff \| blob \| history
bcftools/vcffilter.c		diff \| blob \| history
bcftools/vcffilter.c.pysam.c		diff \| blob \| history
bcftools/vcfgtcheck.c		diff \| blob \| history
bcftools/vcfgtcheck.c.pysam.c		diff \| blob \| history
bcftools/vcfindex.c		diff \| blob \| history
bcftools/vcfindex.c.pysam.c		diff \| blob \| history
bcftools/vcfisec.c		diff \| blob \| history
bcftools/vcfisec.c.pysam.c		diff \| blob \| history
bcftools/vcfmerge.c		diff \| blob \| history
bcftools/vcfmerge.c.pysam.c		diff \| blob \| history
bcftools/vcfnorm.c		diff \| blob \| history
bcftools/vcfnorm.c.pysam.c		diff \| blob \| history
bcftools/vcfplugin.c		diff \| blob \| history
bcftools/vcfplugin.c.pysam.c		diff \| blob \| history
bcftools/vcfquery.c		diff \| blob \| history
bcftools/vcfquery.c.pysam.c		diff \| blob \| history
bcftools/vcfroh.c		diff \| blob \| history
bcftools/vcfroh.c.pysam.c		diff \| blob \| history
bcftools/vcfsort.c		diff \| blob \| history
bcftools/vcfsort.c.pysam.c		diff \| blob \| history
bcftools/vcfstats.c		diff \| blob \| history
bcftools/vcfstats.c.pysam.c		diff \| blob \| history
bcftools/vcfview.c		diff \| blob \| history
bcftools/vcfview.c.pysam.c		diff \| blob \| history
bcftools/version.c		diff \| blob \| history
bcftools/version.c.pysam.c		diff \| blob \| history
bcftools/version.sh		diff \| blob \| history
devtools/import.py		diff \| blob \| history
doc/index.rst		diff \| blob \| history
doc/release.rst		diff \| blob \| history
pysam/libcalignmentfile.pyx		diff \| blob \| history
pysam/libctabixproxies.pxd		diff \| blob \| history
pysam/libctabixproxies.pyx		diff \| blob \| history
pysam/libcutils.pyx		diff \| blob \| history
pysam/samtools.py		diff \| blob \| history
pysam/version.h		diff \| blob \| history
pysam/version.py		diff \| blob \| history
samtools/README		diff \| blob \| history
samtools/bam.c		diff \| blob \| history
samtools/bam.c.pysam.c		diff \| blob \| history
samtools/bam.h		diff \| blob \| history
samtools/bam2bcf.c		diff \| blob \| history
samtools/bam2bcf.c.pysam.c		diff \| blob \| history
samtools/bam2depth.c		diff \| blob \| history
samtools/bam2depth.c.pysam.c		diff \| blob \| history
samtools/bam_aux.c		diff \| blob \| history
samtools/bam_aux.c.pysam.c		diff \| blob \| history
samtools/bam_endian.h	[deleted file]	blob \| history
samtools/bam_fastq.c		diff \| blob \| history
samtools/bam_fastq.c.pysam.c		diff \| blob \| history
samtools/bam_import.c		diff \| blob \| history
samtools/bam_import.c.pysam.c		diff \| blob \| history
samtools/bam_markdup.c		diff \| blob \| history
samtools/bam_markdup.c.pysam.c		diff \| blob \| history
samtools/bam_plcmd.c		diff \| blob \| history
samtools/bam_plcmd.c.pysam.c		diff \| blob \| history
samtools/bam_reheader.c		diff \| blob \| history
samtools/bam_reheader.c.pysam.c		diff \| blob \| history
samtools/bam_samples.c	[new file with mode: 0644]	blob
samtools/bam_samples.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_sort.c		diff \| blob \| history
samtools/bam_sort.c.pysam.c		diff \| blob \| history
samtools/bamshuf.c.pysam.c		diff \| blob \| history
samtools/bamtk.c		diff \| blob \| history
samtools/bamtk.c.pysam.c		diff \| blob \| history
samtools/coverage.c		diff \| blob \| history
samtools/coverage.c.pysam.c		diff \| blob \| history
samtools/sam.c	[deleted file]	blob \| history
samtools/sam.c.pysam.c	[deleted file]	blob \| history
samtools/sam.h	[deleted file]	blob \| history
samtools/sam_utils.c		diff \| blob \| history
samtools/sam_utils.c.pysam.c		diff \| blob \| history
samtools/sam_view.c		diff \| blob \| history
samtools/sam_view.c.pysam.c		diff \| blob \| history
samtools/samtools.h		diff \| blob \| history
samtools/stats.c		diff \| blob \| history
samtools/stats.c.pysam.c		diff \| blob \| history
samtools/version.sh		diff \| blob \| history
tests/tabix_data/Makefile		diff \| blob \| history
tests/tabix_data/empty.bed.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example.bed.gz	[deleted file]	blob \| history
tests/tabix_data/example.bed.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example.gff2.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example.gff3.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example.sam.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example.vcf.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example_badcomments.bed.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example_badcomments.gtf.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example_badcomments.sam.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example_badcomments.vcf.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example_comments.bed.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example_comments.gtf.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example_comments.sam.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example_comments.vcf.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/example_large.bed.gz.tbi	[deleted file]	blob \| history
tests/tabix_data/fivecolumns.bed	[new file with mode: 0644]	blob
tests/tabix_data/vcf/16.vcf		diff \| blob \| history
tests/tabix_data/vcf/2.vcf		diff \| blob \| history
tests/tabix_data/vcf/20.vcf		diff \| blob \| history
tests/tabix_data/vcf/23.vcf		diff \| blob \| history
tests/tabix_test.py		diff \| blob \| history
tests/tabixproxies_test.py		diff \| blob \| history

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