dgit.raspbian.org Git - python-pysam.git/commit

author	Andreas Tille <tille@debian.org>
	Fri, 30 Sep 2022 10:00:06 +0000 (12:00 +0200)
committer	Andreas Tille <tille@debian.org>
	Fri, 30 Sep 2022 10:00:06 +0000 (12:00 +0200)
commit	95d45b0b9d397716d8b779eede3b7d690c7d8823
tree	01b6721a98525c4b4f29e7f0b8d0322b3f9a6457	tree \| snapshot
parent	671ef8fb403132b51234f97328bee378d4d2bc59	commit \| diff

New upstream version 0.19.1+ds

168 files changed:

NEWS		diff \| blob \| history
README.rst		diff \| blob \| history
bcftools/abuf.c		diff \| blob \| history
bcftools/abuf.c.pysam.c		diff \| blob \| history
bcftools/bam_sample.c		diff \| blob \| history
bcftools/bam_sample.c.pysam.c		diff \| blob \| history
bcftools/bcftools.h		diff \| blob \| history
bcftools/bcftools.pysam.c		diff \| blob \| history
bcftools/bcftools.pysam.h		diff \| blob \| history
bcftools/bin.c		diff \| blob \| history
bcftools/bin.c.pysam.c		diff \| blob \| history
bcftools/consensus.c		diff \| blob \| history
bcftools/consensus.c.pysam.c		diff \| blob \| history
bcftools/csq.c		diff \| blob \| history
bcftools/csq.c.pysam.c		diff \| blob \| history
bcftools/dbuf.h	[new file with mode: 0644]	blob
bcftools/filter.c		diff \| blob \| history
bcftools/filter.c.pysam.c		diff \| blob \| history
bcftools/main.c		diff \| blob \| history
bcftools/main.c.pysam.c		diff \| blob \| history
bcftools/mpileup.c		diff \| blob \| history
bcftools/mpileup.c.pysam.c		diff \| blob \| history
bcftools/regidx.h		diff \| blob \| history
bcftools/reheader.c		diff \| blob \| history
bcftools/reheader.c.pysam.c		diff \| blob \| history
bcftools/smpl_ilist.c		diff \| blob \| history
bcftools/smpl_ilist.c.pysam.c		diff \| blob \| history
bcftools/smpl_ilist.h		diff \| blob \| history
bcftools/tsv2vcf.c		diff \| blob \| history
bcftools/tsv2vcf.c.pysam.c		diff \| blob \| history
bcftools/tsv2vcf.h		diff \| blob \| history
bcftools/vcfannotate.c		diff \| blob \| history
bcftools/vcfannotate.c.pysam.c		diff \| blob \| history
bcftools/vcfcall.c		diff \| blob \| history
bcftools/vcfcall.c.pysam.c		diff \| blob \| history
bcftools/vcfcnv.c		diff \| blob \| history
bcftools/vcfcnv.c.pysam.c		diff \| blob \| history
bcftools/vcfconcat.c		diff \| blob \| history
bcftools/vcfconcat.c.pysam.c		diff \| blob \| history
bcftools/vcfconvert.c		diff \| blob \| history
bcftools/vcfconvert.c.pysam.c		diff \| blob \| history
bcftools/vcffilter.c		diff \| blob \| history
bcftools/vcffilter.c.pysam.c		diff \| blob \| history
bcftools/vcfgtcheck.c		diff \| blob \| history
bcftools/vcfgtcheck.c.pysam.c		diff \| blob \| history
bcftools/vcfhead.c	[new file with mode: 0644]	blob
bcftools/vcfhead.c.pysam.c	[new file with mode: 0644]	blob
bcftools/vcfisec.c		diff \| blob \| history
bcftools/vcfisec.c.pysam.c		diff \| blob \| history
bcftools/vcfmerge.c		diff \| blob \| history
bcftools/vcfmerge.c.pysam.c		diff \| blob \| history
bcftools/vcfnorm.c		diff \| blob \| history
bcftools/vcfnorm.c.pysam.c		diff \| blob \| history
bcftools/vcfplugin.c		diff \| blob \| history
bcftools/vcfplugin.c.pysam.c		diff \| blob \| history
bcftools/vcfquery.c		diff \| blob \| history
bcftools/vcfquery.c.pysam.c		diff \| blob \| history
bcftools/vcfroh.c		diff \| blob \| history
bcftools/vcfroh.c.pysam.c		diff \| blob \| history
bcftools/vcfstats.c		diff \| blob \| history
bcftools/vcfstats.c.pysam.c		diff \| blob \| history
bcftools/vcfview.c		diff \| blob \| history
bcftools/vcfview.c.pysam.c		diff \| blob \| history
bcftools/version.c		diff \| blob \| history
bcftools/version.c.pysam.c		diff \| blob \| history
bcftools/version.sh		diff \| blob \| history
cy_build.py		diff \| blob \| history
devtools/import.py		diff \| blob \| history
doc/api.rst		diff \| blob \| history
doc/conf.py		diff \| blob \| history
doc/developer.rst		diff \| blob \| history
doc/faq.rst		diff \| blob \| history
doc/glossary.rst		diff \| blob \| history
doc/index.rst		diff \| blob \| history
doc/release.rst		diff \| blob \| history
doc/usage.rst		diff \| blob \| history
import/pysam.c		diff \| blob \| history
import/pysam.h		diff \| blob \| history
pysam/Pileup.py		diff \| blob \| history
pysam/__init__.py		diff \| blob \| history
pysam/bcftools.py		diff \| blob \| history
pysam/libcalignedsegment.pxd		diff \| blob \| history
pysam/libcalignedsegment.pyi	[new file with mode: 0644]	blob
pysam/libcalignedsegment.pyx		diff \| blob \| history
pysam/libcalignmentfile.pyi	[new file with mode: 0644]	blob
pysam/libcalignmentfile.pyx		diff \| blob \| history
pysam/libcbcf.pxd		diff \| blob \| history
pysam/libcbcf.pyi	[new file with mode: 0644]	blob
pysam/libcbcf.pyx		diff \| blob \| history
pysam/libcbcftools.pxd		diff \| blob \| history
pysam/libcbcftools.pyi	[new file with mode: 0644]	blob
pysam/libcbgzf.pyi	[new file with mode: 0644]	blob
pysam/libcbgzf.pyx		diff \| blob \| history
pysam/libcfaidx.pyi	[new file with mode: 0644]	blob
pysam/libchtslib.pxd		diff \| blob \| history
pysam/libchtslib.pyi	[new file with mode: 0644]	blob
pysam/libchtslib.pyx		diff \| blob \| history
pysam/libcsamfile.pyi	[new file with mode: 0644]	blob
pysam/libcsamtools.pxd		diff \| blob \| history
pysam/libcsamtools.pyi	[new file with mode: 0644]	blob
pysam/libctabix.pyi	[new file with mode: 0644]	blob
pysam/libctabixproxies.pyi	[new file with mode: 0644]	blob
pysam/libcutils.pyi	[new file with mode: 0644]	blob
pysam/libcutils.pyx		diff \| blob \| history
pysam/libcvcf.pyi	[new file with mode: 0644]	blob
pysam/py.typed	[new file with mode: 0644]	blob
pysam/samtools.py		diff \| blob \| history
pysam/version.h		diff \| blob \| history
pysam/version.py		diff \| blob \| history
pysam/version.pyi	[new file with mode: 0644]	blob
samtools/LICENSE		diff \| blob \| history
samtools/README		diff \| blob \| history
samtools/bam2bcf.c	[deleted file]	blob \| history
samtools/bam2bcf.c.pysam.c	[deleted file]	blob \| history
samtools/bam2bcf.h	[deleted file]	blob \| history
samtools/bam2bcf_indel.c	[deleted file]	blob \| history
samtools/bam2bcf_indel.c.pysam.c	[deleted file]	blob \| history
samtools/bam2depth.c		diff \| blob \| history
samtools/bam2depth.c.pysam.c		diff \| blob \| history
samtools/bam_ampliconclip.c		diff \| blob \| history
samtools/bam_ampliconclip.c.pysam.c		diff \| blob \| history
samtools/bam_consensus.c	[new file with mode: 0644]	blob
samtools/bam_consensus.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_lpileup.c		diff \| blob \| history
samtools/bam_lpileup.c.pysam.c		diff \| blob \| history
samtools/bam_markdup.c		diff \| blob \| history
samtools/bam_markdup.c.pysam.c		diff \| blob \| history
samtools/bam_plbuf.h		diff \| blob \| history
samtools/bam_plcmd.c		diff \| blob \| history
samtools/bam_plcmd.c.pysam.c		diff \| blob \| history
samtools/bam_reheader.c.pysam.c		diff \| blob \| history
samtools/bamtk.c		diff \| blob \| history
samtools/bamtk.c.pysam.c		diff \| blob \| history
samtools/bedcov.c		diff \| blob \| history
samtools/bedcov.c.pysam.c		diff \| blob \| history
samtools/consensus_pileup.c	[new file with mode: 0644]	blob
samtools/consensus_pileup.c.pysam.c	[new file with mode: 0644]	blob
samtools/consensus_pileup.h	[new file with mode: 0644]	blob
samtools/phase.c		diff \| blob \| history
samtools/phase.c.pysam.c		diff \| blob \| history
samtools/sam_view.c		diff \| blob \| history
samtools/sam_view.c.pysam.c		diff \| blob \| history
samtools/samtools.pysam.c		diff \| blob \| history
samtools/samtools.pysam.h		diff \| blob \| history
samtools/splaysort.h	[new file with mode: 0644]	blob
samtools/stats.c		diff \| blob \| history
samtools/stats.c.pysam.c		diff \| blob \| history
samtools/version.sh		diff \| blob \| history
setup.cfg		diff \| blob \| history
setup.py		diff \| blob \| history
tests/AlignedSegment_test.py		diff \| blob \| history
tests/AlignmentFileFetchTestUtils.py		diff \| blob \| history
tests/AlignmentFileFetch_bench.py		diff \| blob \| history
tests/AlignmentFileHeader_test.py		diff \| blob \| history
tests/AlignmentFilePileup_bench.py		diff \| blob \| history
tests/PileupTestUtils.py		diff \| blob \| history
tests/TestUtils.py		diff \| blob \| history
tests/VariantFileFetchTestUtils.py		diff \| blob \| history
tests/VariantFile_bench.py		diff \| blob \| history
tests/VariantFile_test.py		diff \| blob \| history
tests/VariantRecord_test.py		diff \| blob \| history
tests/faidx_test.py		diff \| blob \| history
tests/pysam_data/MM-chebi.sam	[new file with mode: 0644]	blob
tests/pysam_data/MM-double.sam	[new file with mode: 0644]	blob
tests/pysam_data/MM-multi.sam	[new file with mode: 0644]	blob
tests/pysam_data/MM-orient.sam	[new file with mode: 0644]	blob
tests/tabixproxies_test.py		diff \| blob \| history
tests/test_samtools_python.py		diff \| blob \| history

Unnamed repository; edit this file 'description' to name the repository.

RSS Atom