dgit.raspbian.org Git - python-pysam.git/commit

author	Jorge Soares <j.s.soares@gmail.com>
	Wed, 26 Nov 2014 11:06:32 +0000 (11:06 +0000)
committer	Jorge Soares <j.s.soares@gmail.com>
	Wed, 26 Nov 2014 11:06:32 +0000 (11:06 +0000)
commit	91878cb6cda2aedc6e5e70177280bfa0c2fb4849
tree	22ca5115094dccd8705b0c3743c57b1e884ac616	tree \| snapshot
parent	3d2e27b2cf8032c41ad5741c66faad6bd5666bdc	commit \| diff

Imported Upstream version 0.8.1

197 files changed:

INSTALL		diff \| blob \| history
PKG-INFO		diff \| blob \| history
README.rst		diff \| blob \| history
debian/changelog	[deleted file]	blob \| history
debian/compat	[deleted file]	blob \| history
debian/control	[deleted file]	blob \| history
debian/copyright	[deleted file]	blob \| history
debian/gbp.conf	[deleted file]	blob \| history
debian/patches/do_not_use_distribute_setup.patch	[deleted file]	blob \| history
debian/patches/fix_cleanup_tests.patch	[deleted file]	blob \| history
debian/patches/offline-tests.patch	[deleted file]	blob \| history
debian/patches/series	[deleted file]	blob \| history
debian/patches/use_external_htslib.patch	[deleted file]	blob \| history
debian/python-pysam-tests.README.Debian	[deleted file]	blob \| history
debian/python-pysam-tests.docs	[deleted file]	blob \| history
debian/python-pysam-tests.install	[deleted file]	blob \| history
debian/rules	[deleted file]	blob \| history
debian/source/format	[deleted file]	blob \| history
debian/tests/control	[deleted file]	blob \| history
debian/tests/run-unit-test	[deleted file]	blob \| history
debian/watch	[deleted file]	blob \| history
doc/api.rst		diff \| blob \| history
doc/conf.py		diff \| blob \| history
doc/developer.rst		diff \| blob \| history
doc/faq.rst		diff \| blob \| history
doc/glossary.rst		diff \| blob \| history
doc/index.rst		diff \| blob \| history
doc/out	[new file with mode: 0644]	blob
doc/release.rst		diff \| blob \| history
doc/usage.rst		diff \| blob \| history
htslib/__init__.py	[deleted file]	blob \| history
htslib/bgzf.c		diff \| blob \| history
htslib/bgzip.c		diff \| blob \| history
htslib/cram/cram_decode.c		diff \| blob \| history
htslib/cram/cram_index.c		diff \| blob \| history
htslib/cram/cram_io.c		diff \| blob \| history
htslib/cram/cram_io.h		diff \| blob \| history
htslib/cram/open_trace_file.c		diff \| blob \| history
htslib/faidx.c		diff \| blob \| history
htslib/hfile.c		diff \| blob \| history
htslib/hfile_internal.h		diff \| blob \| history
htslib/hfile_net.c		diff \| blob \| history
htslib/hts.c		diff \| blob \| history
htslib/htslib/__init__.py	[deleted file]	blob \| history
htslib/htslib/bgzf.h		diff \| blob \| history
htslib/htslib/faidx.h		diff \| blob \| history
htslib/htslib/hfile.h		diff \| blob \| history
htslib/htslib/hts.h		diff \| blob \| history
htslib/htslib/hts_defs.h		diff \| blob \| history
htslib/htslib/kfunc.h		diff \| blob \| history
htslib/htslib/khash_str2int.h		diff \| blob \| history
htslib/htslib/knetfile.h		diff \| blob \| history
htslib/htslib/kstdint.h	[deleted file]	blob \| history
htslib/htslib/kstring.h		diff \| blob \| history
htslib/htslib/sam.h		diff \| blob \| history
htslib/htslib/synced_bcf_reader.h		diff \| blob \| history
htslib/htslib/tbx.h		diff \| blob \| history
htslib/htslib/vcf.h		diff \| blob \| history
htslib/htslib/vcf_sweep.h		diff \| blob \| history
htslib/htslib/vcfutils.h		diff \| blob \| history
htslib/kfunc.c		diff \| blob \| history
htslib/knetfile.c		diff \| blob \| history
htslib/kstring.c		diff \| blob \| history
htslib/sam.c		diff \| blob \| history
htslib/synced_bcf_reader.c		diff \| blob \| history
htslib/tabix.c		diff \| blob \| history
htslib/tbx.c		diff \| blob \| history
htslib/vcf.c		diff \| blob \| history
htslib/vcf_sweep.c		diff \| blob \| history
htslib/vcfutils.c		diff \| blob \| history
htslib/version.h		diff \| blob \| history
pysam.egg-info/PKG-INFO		diff \| blob \| history
pysam.egg-info/SOURCES.txt		diff \| blob \| history
pysam.egg-info/requires.txt	[deleted file]	blob \| history
pysam.py		diff \| blob \| history
pysam/TabProxies.c		diff \| blob \| history
pysam/TabProxies.pxd		diff \| blob \| history
pysam/TabProxies.pyx		diff \| blob \| history
pysam/__init__.py		diff \| blob \| history
pysam/calignmentfile.c	[new file with mode: 0644]	blob
pysam/calignmentfile.pxd	[new file with mode: 0644]	blob
pysam/calignmentfile.pyx	[new file with mode: 0644]	blob
pysam/cfaidx.c		diff \| blob \| history
pysam/cfaidx.pxd		diff \| blob \| history
pysam/cfaidx.pyx		diff \| blob \| history
pysam/chtslib.c		diff \| blob \| history
pysam/chtslib.pxd		diff \| blob \| history
pysam/csamfile.c		diff \| blob \| history
pysam/csamfile.pxd		diff \| blob \| history
pysam/csamfile.pyx		diff \| blob \| history
pysam/csamtools.c		diff \| blob \| history
pysam/ctabix.c		diff \| blob \| history
pysam/ctabix.pxd		diff \| blob \| history
pysam/ctabix.pyx		diff \| blob \| history
pysam/cvcf.c		diff \| blob \| history
pysam/cvcf.pyx		diff \| blob \| history
pysam/htslib_util.h		diff \| blob \| history
pysam/pysam_util.c		diff \| blob \| history
pysam/samfile_util.c		diff \| blob \| history
pysam/samfile_util.h		diff \| blob \| history
pysam/version.py		diff \| blob \| history
samtools/__init__.py	[deleted file]	blob \| history
samtools/bam.c.pysam.c		diff \| blob \| history
samtools/bam.h		diff \| blob \| history
samtools/bam2bcf.c.pysam.c		diff \| blob \| history
samtools/bam2bcf.h		diff \| blob \| history
samtools/bam2bcf_indel.c.pysam.c		diff \| blob \| history
samtools/bam2depth.c.pysam.c		diff \| blob \| history
samtools/bam_aux.c.pysam.c		diff \| blob \| history
samtools/bam_cat.c.pysam.c		diff \| blob \| history
samtools/bam_color.c.pysam.c		diff \| blob \| history
samtools/bam_endian.h		diff \| blob \| history
samtools/bam_flags.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_import.c.pysam.c		diff \| blob \| history
samtools/bam_index.c.pysam.c		diff \| blob \| history
samtools/bam_lpileup.c.pysam.c		diff \| blob \| history
samtools/bam_lpileup.h	[new file with mode: 0644]	blob
samtools/bam_mate.c.pysam.c		diff \| blob \| history
samtools/bam_md.c.pysam.c		diff \| blob \| history
samtools/bam_pileup.c.pysam.c	[deleted file]	blob \| history
samtools/bam_plbuf.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_plbuf.h	[new file with mode: 0644]	blob
samtools/bam_plcmd.c.pysam.c		diff \| blob \| history
samtools/bam_reheader.c.pysam.c		diff \| blob \| history
samtools/bam_rmdup.c.pysam.c		diff \| blob \| history
samtools/bam_rmdupse.c.pysam.c		diff \| blob \| history
samtools/bam_sort.c.pysam.c		diff \| blob \| history
samtools/bam_split.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_stat.c.pysam.c		diff \| blob \| history
samtools/bam_tview.c.pysam.c		diff \| blob \| history
samtools/bam_tview.h		diff \| blob \| history
samtools/bam_tview_curses.c.pysam.c		diff \| blob \| history
samtools/bam_tview_html.c.pysam.c		diff \| blob \| history
samtools/bamshuf.c.pysam.c		diff \| blob \| history
samtools/bcftools/__init__.py	[deleted file]	blob \| history
samtools/bcftools/bcf.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/bcf.h	[deleted file]	blob \| history
samtools/bcftools/bcf2qcall.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/bcfutils.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/call1.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/em.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/fet.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/index.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/kfunc.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/kmin.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/kmin.h	[deleted file]	blob \| history
samtools/bcftools/mut.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/prob1.c.pysam.c	[deleted file]	blob \| history
samtools/bcftools/prob1.h	[deleted file]	blob \| history
samtools/bcftools/vcf.c.pysam.c	[deleted file]	blob \| history
samtools/bedcov.c.pysam.c		diff \| blob \| history
samtools/bedidx.c.pysam.c		diff \| blob \| history
samtools/bgzf.c.pysam.c	[deleted file]	blob \| history
samtools/bgzf.h	[deleted file]	blob \| history
samtools/cut_target.c.pysam.c		diff \| blob \| history
samtools/errmod.c.pysam.c		diff \| blob \| history
samtools/errmod.h		diff \| blob \| history
samtools/faidx.c.pysam.c		diff \| blob \| history
samtools/faidx.h	[deleted file]	blob \| history
samtools/kaln.c.pysam.c		diff \| blob \| history
samtools/kaln.h		diff \| blob \| history
samtools/khash.h	[deleted file]	blob \| history
samtools/klist.h	[deleted file]	blob \| history
samtools/knetfile.c.pysam.c	[deleted file]	blob \| history
samtools/knetfile.h	[deleted file]	blob \| history
samtools/kprobaln.c		diff \| blob \| history
samtools/kprobaln.c.pysam.c		diff \| blob \| history
samtools/kprobaln.h		diff \| blob \| history
samtools/kseq.h	[deleted file]	blob \| history
samtools/ksort.h	[deleted file]	blob \| history
samtools/kstring.c.pysam.c	[deleted file]	blob \| history
samtools/kstring.h	[deleted file]	blob \| history
samtools/misc/ace2sam.c.pysam.c		diff \| blob \| history
samtools/misc/md5.c.pysam.c		diff \| blob \| history
samtools/padding.c.pysam.c		diff \| blob \| history
samtools/phase.c.pysam.c		diff \| blob \| history
samtools/razf.c.pysam.c	[deleted file]	blob \| history
samtools/razf.h	[deleted file]	blob \| history
samtools/sam.c.pysam.c		diff \| blob \| history
samtools/sam.h		diff \| blob \| history
samtools/sam_header.c.pysam.c		diff \| blob \| history
samtools/sam_header.h		diff \| blob \| history
samtools/sam_view.c.pysam.c		diff \| blob \| history
samtools/sample.c.pysam.c		diff \| blob \| history
samtools/sample.h		diff \| blob \| history
samtools/samtools.h	[new file with mode: 0644]	blob
samtools/stats.c.pysam.c	[new file with mode: 0644]	blob
samtools/stats_isize.c.pysam.c	[new file with mode: 0644]	blob
samtools/stats_isize.h	[new file with mode: 0644]	blob
samtools/test/test.c.pysam.c	[new file with mode: 0644]	blob
samtools/test/test.h	[new file with mode: 0644]	blob
samtools/version.h	[new file with mode: 0644]	blob
samtools/win32/__init__.py	[deleted file]	blob \| history
setup.py		diff \| blob \| history
tests/example.gtf.gz.tbi	[deleted file]	blob \| history
tests/pysam_test.py	[deleted file]	blob \| history
tests/tabix_test.py	[deleted file]	blob \| history

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