dgit.raspbian.org Git - python-pysam.git/commit

author	Étienne Mollier <emollier@debian.org>
	Sun, 11 Jun 2023 12:43:31 +0000 (14:43 +0200)
committer	Étienne Mollier <emollier@debian.org>
	Sun, 11 Jun 2023 12:43:31 +0000 (14:43 +0200)
commit	5486b17301f333bb9baa96f655598fcd64038e34
tree	0356c201a449452175a1dafc3c4a0f89a440183c	tree \| snapshot
parent	9ae61ccd7dfcfb7733df826dd6f728711d9084ae	commit \| diff

New upstream version 0.21.0+ds

140 files changed:

.python-version	[new file with mode: 0644]	blob
NEWS		diff \| blob \| history
README.rst		diff \| blob \| history
bcftools/LICENSE		diff \| blob \| history
bcftools/abuf.c		diff \| blob \| history
bcftools/abuf.c.pysam.c		diff \| blob \| history
bcftools/bam2bcf.c		diff \| blob \| history
bcftools/bam2bcf.c.pysam.c		diff \| blob \| history
bcftools/bam2bcf.h		diff \| blob \| history
bcftools/bam2bcf_iaux.c	[new file with mode: 0644]	blob
bcftools/bam2bcf_iaux.c.pysam.c	[new file with mode: 0644]	blob
bcftools/bam2bcf_indel.c		diff \| blob \| history
bcftools/bam2bcf_indel.c.pysam.c		diff \| blob \| history
bcftools/bcftools.h		diff \| blob \| history
bcftools/cigar_state.h	[new file with mode: 0644]	blob
bcftools/consensus.c		diff \| blob \| history
bcftools/consensus.c.pysam.c		diff \| blob \| history
bcftools/convert.c		diff \| blob \| history
bcftools/convert.c.pysam.c		diff \| blob \| history
bcftools/csq.c		diff \| blob \| history
bcftools/csq.c.pysam.c		diff \| blob \| history
bcftools/filter.c		diff \| blob \| history
bcftools/filter.c.pysam.c		diff \| blob \| history
bcftools/filter.h		diff \| blob \| history
bcftools/main.c		diff \| blob \| history
bcftools/main.c.pysam.c		diff \| blob \| history
bcftools/mcall.c		diff \| blob \| history
bcftools/mcall.c.pysam.c		diff \| blob \| history
bcftools/mpileup.c		diff \| blob \| history
bcftools/mpileup.c.pysam.c		diff \| blob \| history
bcftools/read_consensus.c	[new file with mode: 0644]	blob
bcftools/read_consensus.c.pysam.c	[new file with mode: 0644]	blob
bcftools/read_consensus.h	[new file with mode: 0644]	blob
bcftools/smpl_ilist.h		diff \| blob \| history
bcftools/vcfannotate.c		diff \| blob \| history
bcftools/vcfannotate.c.pysam.c		diff \| blob \| history
bcftools/vcfcall.c		diff \| blob \| history
bcftools/vcfcall.c.pysam.c		diff \| blob \| history
bcftools/vcfconcat.c		diff \| blob \| history
bcftools/vcfconcat.c.pysam.c		diff \| blob \| history
bcftools/vcfmerge.c		diff \| blob \| history
bcftools/vcfmerge.c.pysam.c		diff \| blob \| history
bcftools/vcfnorm.c		diff \| blob \| history
bcftools/vcfnorm.c.pysam.c		diff \| blob \| history
bcftools/vcfquery.c		diff \| blob \| history
bcftools/vcfquery.c.pysam.c		diff \| blob \| history
bcftools/vcfsort.c		diff \| blob \| history
bcftools/vcfsort.c.pysam.c		diff \| blob \| history
bcftools/vcfstats.c		diff \| blob \| history
bcftools/vcfstats.c.pysam.c		diff \| blob \| history
bcftools/vcfview.c		diff \| blob \| history
bcftools/vcfview.c.pysam.c		diff \| blob \| history
bcftools/version.sh		diff \| blob \| history
cy_build.py		diff \| blob \| history
doc/index.rst		diff \| blob \| history
linker_tests/link_pre_489/cy_build.py		diff \| blob \| history
pyproject.toml	[new file with mode: 0644]	blob
pysam/__init__.py		diff \| blob \| history
pysam/bcftools.py		diff \| blob \| history
pysam/libcalignedsegment.pxd		diff \| blob \| history
pysam/libcalignedsegment.pyx		diff \| blob \| history
pysam/libcalignmentfile.pxd		diff \| blob \| history
pysam/libcalignmentfile.pyi		diff \| blob \| history
pysam/libcalignmentfile.pyx		diff \| blob \| history
pysam/libcbcf.pxd		diff \| blob \| history
pysam/libcbcf.pyx		diff \| blob \| history
pysam/libcbcftools.pxd		diff \| blob \| history
pysam/libcbgzf.pyx		diff \| blob \| history
pysam/libcfaidx.pxd		diff \| blob \| history
pysam/libcfaidx.pyi		diff \| blob \| history
pysam/libcfaidx.pyx		diff \| blob \| history
pysam/libchtslib.pxd		diff \| blob \| history
pysam/libchtslib.pyx		diff \| blob \| history
pysam/libcsamfile.pxd		diff \| blob \| history
pysam/libcsamfile.pyx		diff \| blob \| history
pysam/libcsamtools.pxd		diff \| blob \| history
pysam/libctabix.pxd		diff \| blob \| history
pysam/libctabix.pyx		diff \| blob \| history
pysam/libctabixproxies.pxd		diff \| blob \| history
pysam/libctabixproxies.pyx		diff \| blob \| history
pysam/libcutils.pxd		diff \| blob \| history
pysam/libcutils.pyx		diff \| blob \| history
pysam/libcvcf.pxd		diff \| blob \| history
pysam/samtools.py		diff \| blob \| history
pysam/utils.py		diff \| blob \| history
pysam/version.h		diff \| blob \| history
pysam/version.py		diff \| blob \| history
samtools/LICENSE		diff \| blob \| history
samtools/README		diff \| blob \| history
samtools/amplicon_stats.c		diff \| blob \| history
samtools/amplicon_stats.c.pysam.c		diff \| blob \| history
samtools/bam2depth.c		diff \| blob \| history
samtools/bam2depth.c.pysam.c		diff \| blob \| history
samtools/bam_ampliconclip.c		diff \| blob \| history
samtools/bam_ampliconclip.c.pysam.c		diff \| blob \| history
samtools/bam_consensus.c		diff \| blob \| history
samtools/bam_consensus.c.pysam.c		diff \| blob \| history
samtools/bam_import.c		diff \| blob \| history
samtools/bam_import.c.pysam.c		diff \| blob \| history
samtools/bam_markdup.c		diff \| blob \| history
samtools/bam_markdup.c.pysam.c		diff \| blob \| history
samtools/bam_mate.c		diff \| blob \| history
samtools/bam_mate.c.pysam.c		diff \| blob \| history
samtools/bam_md.c		diff \| blob \| history
samtools/bam_md.c.pysam.c		diff \| blob \| history
samtools/bam_plcmd.c		diff \| blob \| history
samtools/bam_plcmd.c.pysam.c		diff \| blob \| history
samtools/bam_sort.c		diff \| blob \| history
samtools/bam_sort.c.pysam.c		diff \| blob \| history
samtools/bamshuf.c		diff \| blob \| history
samtools/bamshuf.c.pysam.c		diff \| blob \| history
samtools/bamtk.c		diff \| blob \| history
samtools/bamtk.c.pysam.c		diff \| blob \| history
samtools/consensus_pileup.c		diff \| blob \| history
samtools/consensus_pileup.c.pysam.c		diff \| blob \| history
samtools/consensus_pileup.h		diff \| blob \| history
samtools/cram_size.c	[new file with mode: 0644]	blob
samtools/cram_size.c.pysam.c	[new file with mode: 0644]	blob
samtools/faidx.c		diff \| blob \| history
samtools/faidx.c.pysam.c		diff \| blob \| history
samtools/reset.c	[new file with mode: 0644]	blob
samtools/reset.c.pysam.c	[new file with mode: 0644]	blob
samtools/sam_utils.c		diff \| blob \| history
samtools/sam_utils.c.pysam.c		diff \| blob \| history
samtools/sam_utils.h	[new file with mode: 0644]	blob
samtools/sam_view.c		diff \| blob \| history
samtools/sam_view.c.pysam.c		diff \| blob \| history
samtools/samtools.h		diff \| blob \| history
samtools/stats.c		diff \| blob \| history
samtools/stats.c.pysam.c		diff \| blob \| history
samtools/version.sh		diff \| blob \| history
setup.py		diff \| blob \| history
tests/AlignedSegment_test.py		diff \| blob \| history
tests/AlignmentFilePileup_test.py		diff \| blob \| history
tests/AlignmentFile_test.py		diff \| blob \| history
tests/compile_test.py		diff \| blob \| history
tests/pysam_data/ex_spliced.sam		diff \| blob \| history
tests/tabix_test.py		diff \| blob \| history
tests/tabixproxies_test.py		diff \| blob \| history
tox.ini	[new file with mode: 0644]	blob

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