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Import htslib_1.1.orig.tar.gz
authorCharles Plessy <plessy@debian.org>
Wed, 24 Sep 2014 12:24:11 +0000 (12:24 +0000)
committerCharles Plessy <plessy@debian.org>
Wed, 24 Sep 2014 12:24:11 +0000 (12:24 +0000)
commit544afd2e0a85ffa81ab7a6270bdca4dcba22b73c
treeea7b6b2943af83f313eb4ac6fc37b32545f302c9tree | snapshot
Import htslib_1.1.orig.tar.gz

[dgit import orig htslib_1.1.orig.tar.gz]
129 files changed:
INSTALL [new file with mode: 0644] blob
LICENSE [new file with mode: 0644] blob
Makefile [new file with mode: 0644] blob
README [new file with mode: 0644] blob
bgzf.c [new file with mode: 0644] blob
bgzip.c [new file with mode: 0644] blob
config.h [new file with mode: 0644] blob
cram/cram.h [new file with mode: 0644] blob
cram/cram_codecs.c [new file with mode: 0644] blob
cram/cram_codecs.h [new file with mode: 0644] blob
cram/cram_decode.c [new file with mode: 0644] blob
cram/cram_decode.h [new file with mode: 0644] blob
cram/cram_encode.c [new file with mode: 0644] blob
cram/cram_encode.h [new file with mode: 0644] blob
cram/cram_index.c [new file with mode: 0644] blob
cram/cram_index.h [new file with mode: 0644] blob
cram/cram_io.c [new file with mode: 0644] blob
cram/cram_io.h [new file with mode: 0644] blob
cram/cram_samtools.c [new file with mode: 0644] blob
cram/cram_samtools.h [new file with mode: 0644] blob
cram/cram_stats.c [new file with mode: 0644] blob
cram/cram_stats.h [new file with mode: 0644] blob
cram/cram_structs.h [new file with mode: 0644] blob
cram/files.c [new file with mode: 0644] blob
cram/mFILE.c [new file with mode: 0644] blob
cram/mFILE.h [new file with mode: 0644] blob
cram/md5.c [new file with mode: 0644] blob
cram/md5.h [new file with mode: 0644] blob
cram/misc.h [new file with mode: 0644] blob
cram/open_trace_file.c [new file with mode: 0644] blob
cram/open_trace_file.h [new file with mode: 0644] blob
cram/os.h [new file with mode: 0644] blob
cram/pooled_alloc.c [new file with mode: 0644] blob
cram/pooled_alloc.h [new file with mode: 0644] blob
cram/sam_header.c [new file with mode: 0644] blob
cram/sam_header.h [new file with mode: 0644] blob
cram/string_alloc.c [new file with mode: 0644] blob
cram/string_alloc.h [new file with mode: 0644] blob
cram/thread_pool.c [new file with mode: 0644] blob
cram/thread_pool.h [new file with mode: 0644] blob
cram/vlen.c [new file with mode: 0644] blob
cram/vlen.h [new file with mode: 0644] blob
cram/zfio.c [new file with mode: 0644] blob
cram/zfio.h [new file with mode: 0644] blob
faidx.5 [new file with mode: 0644] blob
faidx.c [new file with mode: 0644] blob
hfile.c [new file with mode: 0644] blob
hfile_internal.h [new file with mode: 0644] blob
hfile_net.c [new file with mode: 0644] blob
hts.c [new file with mode: 0644] blob
htslib.mk [new file with mode: 0644] blob
htslib.pc.in [new file with mode: 0644] blob
htslib/bgzf.h [new file with mode: 0644] blob
htslib/faidx.h [new file with mode: 0644] blob
htslib/hfile.h [new file with mode: 0644] blob
htslib/hts.h [new file with mode: 0644] blob
htslib/hts_defs.h [new file with mode: 0644] blob
htslib/kfunc.h [new file with mode: 0644] blob
htslib/khash.h [new file with mode: 0644] blob
htslib/khash_str2int.h [new file with mode: 0644] blob
htslib/klist.h [new file with mode: 0644] blob
htslib/knetfile.h [new file with mode: 0644] blob
htslib/kseq.h [new file with mode: 0644] blob
htslib/ksort.h [new file with mode: 0644] blob
htslib/kstring.h [new file with mode: 0644] blob
htslib/sam.h [new file with mode: 0644] blob
htslib/synced_bcf_reader.h [new file with mode: 0644] blob
htslib/tbx.h [new file with mode: 0644] blob
htslib/vcf.h [new file with mode: 0644] blob
htslib/vcf_sweep.h [new file with mode: 0644] blob
htslib/vcfutils.h [new file with mode: 0644] blob
htslib_vars.mk [new file with mode: 0644] blob
kfunc.c [new file with mode: 0644] blob
knetfile.c [new file with mode: 0644] blob
kstring.c [new file with mode: 0644] blob
sam.5 [new file with mode: 0644] blob
sam.c [new file with mode: 0644] blob
synced_bcf_reader.c [new file with mode: 0644] blob
tabix.1 [new file with mode: 0644] blob
tabix.c [new file with mode: 0644] blob
tbx.c [new file with mode: 0644] blob
test/aux#aux.sam [new file with mode: 0644] blob
test/aux.fa [new file with mode: 0644] blob
test/aux.fa.fai [new file with mode: 0644] blob
test/c1#bounds.sam [new file with mode: 0644] blob
test/c1#clip.sam [new file with mode: 0644] blob
test/c1#pad1.sam [new file with mode: 0644] blob
test/c1#pad2.sam [new file with mode: 0644] blob
test/c1#pad3.sam [new file with mode: 0644] blob
test/c1.fa [new file with mode: 0644] blob
test/c1.fa.fai [new file with mode: 0644] blob
test/ce#1.sam [new file with mode: 0644] blob
test/ce#2.sam [new file with mode: 0644] blob
test/ce#5.sam [new file with mode: 0644] blob
test/ce#5b.sam [new file with mode: 0644] blob
test/ce#large_seq.sam [new file with mode: 0644] blob
test/ce#tag_depadded.sam [new file with mode: 0644] blob
test/ce#tag_padded.sam [new file with mode: 0644] blob
test/ce#unmap.sam [new file with mode: 0644] blob
test/ce#unmap1.sam [new file with mode: 0644] blob
test/ce#unmap2.sam [new file with mode: 0644] blob
test/ce.fa [new file with mode: 0644] blob
test/ce.fa.fai [new file with mode: 0644] blob
test/compare_sam.pl [new file with mode: 0755] blob
test/fieldarith.c [new file with mode: 0644] blob
test/fieldarith.sam [new file with mode: 0644] blob
test/hfile.c [new file with mode: 0644] blob
test/sam.c [new file with mode: 0644] blob
test/test-vcf-api.c [new file with mode: 0644] blob
test/test-vcf-api.out [new file with mode: 0644] blob
test/test-vcf-sweep.c [new file with mode: 0644] blob
test/test-vcf-sweep.out [new file with mode: 0644] blob
test/test.pl [new file with mode: 0755] blob
test/test_view.c [new file with mode: 0644] blob
test/test_view.pl [new file with mode: 0755] blob
test/xx#blank.sam [new file with mode: 0644] blob
test/xx#large_aux.sam [new file with mode: 0644] blob
test/xx#large_aux2.sam [new file with mode: 0644] blob
test/xx#minimal.sam [new file with mode: 0644] blob
test/xx#pair.sam [new file with mode: 0644] blob
test/xx#rg.sam [new file with mode: 0644] blob
test/xx#triplet.sam [new file with mode: 0644] blob
test/xx#unsorted.sam [new file with mode: 0644] blob
test/xx.fa [new file with mode: 0644] blob
test/xx.fa.fai [new file with mode: 0644] blob
vcf.5 [new file with mode: 0644] blob
vcf.c [new file with mode: 0644] blob
vcf_sweep.c [new file with mode: 0644] blob
vcfutils.c [new file with mode: 0644] blob
Unnamed repository; edit this file 'description' to name the repository.