projects / bcftools.git / commit
? search:
summary | shortlog | log | commit | commitdiff | tree
(initial) | patch
Import bcftools_1.4.1.orig.tar.gz
authorAndreas Tille <tille@debian.org>
Sun, 18 Jun 2017 19:41:36 +0000 (20:41 +0100)
committerAndreas Tille <tille@debian.org>
Sun, 18 Jun 2017 19:41:36 +0000 (20:41 +0100)
commit47812c97deb94eb46d34f0af51818b8b43d94f19
treef03e199583365402e6b815e37d3940b9ed4382a7tree | snapshot
Import bcftools_1.4.1.orig.tar.gz

[dgit import orig bcftools_1.4.1.orig.tar.gz]
794 files changed:
AUTHORS [new file with mode: 0644] blob
HMM.c [new file with mode: 0644] blob
HMM.h [new file with mode: 0644] blob
INSTALL [new file with mode: 0644] blob
LICENSE [new file with mode: 0644] blob
Makefile [new file with mode: 0644] blob
NEWS [new file with mode: 0644] blob
README [new file with mode: 0644] blob
bam2bcf.c [new file with mode: 0644] blob
bam2bcf.h [new file with mode: 0644] blob
bam2bcf_indel.c [new file with mode: 0644] blob
bam_sample.c [new file with mode: 0644] blob
bam_sample.h [new file with mode: 0644] blob
bcftools.h [new file with mode: 0644] blob
bin.c [new file with mode: 0644] blob
bin.h [new file with mode: 0644] blob
call.h [new file with mode: 0644] blob
ccall.c [new file with mode: 0644] blob
consensus.c [new file with mode: 0644] blob
convert.c [new file with mode: 0644] blob
convert.h [new file with mode: 0644] blob
csq.c [new file with mode: 0644] blob
doc/bcftools.1 [new file with mode: 0644] blob
doc/bcftools.html [new file with mode: 0644] blob
doc/bcftools.txt [new file with mode: 0644] blob
doc/docbook-xsl.css [new file with mode: 0644] blob
em.c [new file with mode: 0644] blob
filter.c [new file with mode: 0644] blob
filter.h [new file with mode: 0644] blob
gvcf.c [new file with mode: 0644] blob
gvcf.h [new file with mode: 0644] blob
hclust.c [new file with mode: 0644] blob
hclust.h [new file with mode: 0644] blob
khash_str2str.h [new file with mode: 0644] blob
kheap.h [new file with mode: 0644] blob
kmin.c [new file with mode: 0644] blob
kmin.h [new file with mode: 0644] blob
main.c [new file with mode: 0644] blob
mcall.c [new file with mode: 0644] blob
misc/color-chrs.pl [new file with mode: 0755] blob
misc/guess-ploidy.py [new file with mode: 0755] blob
misc/plot-roh.py [new file with mode: 0755] blob
misc/plot-vcfstats [new file with mode: 0755] blob
misc/run-roh.pl [new file with mode: 0755] blob
misc/vcfutils.pl [new file with mode: 0755] blob
mpileup.c [new file with mode: 0644] blob
mw.h [new file with mode: 0644] blob
peakfit.c [new file with mode: 0644] blob
peakfit.h [new file with mode: 0644] blob
ploidy.c [new file with mode: 0644] blob
ploidy.h [new file with mode: 0644] blob
plugins/GTisec.c [new file with mode: 0644] blob
plugins/GTisec.mk [new file with mode: 0644] blob
plugins/GTsubset.c [new file with mode: 0644] blob
plugins/GTsubset.mk [new file with mode: 0644] blob
plugins/ad-bias.c [new file with mode: 0644] blob
plugins/ad-bias.mk [new file with mode: 0644] blob
plugins/af-dist.c [new file with mode: 0644] blob
plugins/af-dist.mk [new file with mode: 0644] blob
plugins/check-sparsity.c [new file with mode: 0644] blob
plugins/color-chrs.c [new file with mode: 0644] blob
plugins/color-chrs.mk [new file with mode: 0644] blob
plugins/counts.c [new file with mode: 0644] blob
plugins/dosage.c [new file with mode: 0644] blob
plugins/fill-AN-AC.c [new file with mode: 0644] blob
plugins/fill-from-fasta.c [new file with mode: 0644] blob
plugins/fill-from-fasta.mk [new file with mode: 0644] blob
plugins/fill-tags.c [new file with mode: 0644] blob
plugins/fixploidy.c [new file with mode: 0644] blob
plugins/fixploidy.mk [new file with mode: 0644] blob
plugins/fixref.c [new file with mode: 0644] blob
plugins/frameshifts.c [new file with mode: 0644] blob
plugins/guess-ploidy.c [new file with mode: 0644] blob
plugins/impute-info.c [new file with mode: 0644] blob
plugins/isecGT.c [new file with mode: 0644] blob
plugins/mendelian.c [new file with mode: 0644] blob
plugins/missing2ref.c [new file with mode: 0644] blob
plugins/setGT.c [new file with mode: 0644] blob
plugins/setGT.mk [new file with mode: 0644] blob
plugins/tag2tag.c [new file with mode: 0644] blob
plugins/trio-switch-rate.c [new file with mode: 0644] blob
polysomy.c [new file with mode: 0644] blob
prob1.c [new file with mode: 0644] blob
prob1.h [new file with mode: 0644] blob
rbuf.h [new file with mode: 0644] blob
regidx.c [new file with mode: 0644] blob
regidx.h [new file with mode: 0644] blob
reheader.c [new file with mode: 0644] blob
smpl_ilist.c [new file with mode: 0644] blob
smpl_ilist.h [new file with mode: 0644] blob
tabix.c [new file with mode: 0644] blob
test/23andme.fa [new file with mode: 0644] blob
test/23andme.fa.fai [new file with mode: 0644] blob
test/aa.fa [new file with mode: 0644] blob
test/aa.fa.fai [new file with mode: 0644] blob
test/aa.hdr [new file with mode: 0644] blob
test/aa.out [new file with mode: 0644] blob
test/aa.vcf [new file with mode: 0644] blob
test/ad-bias.out [new file with mode: 0644] blob
test/ad-bias.samples [new file with mode: 0644] blob
test/ad-bias.vcf [new file with mode: 0644] blob
test/af-dist.out [new file with mode: 0644] blob
test/af-dist.vcf [new file with mode: 0644] blob
test/annotate.hdr [new file with mode: 0644] blob
test/annotate.out [new file with mode: 0644] blob
test/annotate.tab [new file with mode: 0644] blob
test/annotate.vcf [new file with mode: 0644] blob
test/annotate10.hdr [new file with mode: 0644] blob
test/annotate10.out [new file with mode: 0644] blob
test/annotate10.vcf [new file with mode: 0644] blob
test/annotate11.out [new file with mode: 0644] blob
test/annotate12.out [new file with mode: 0644] blob
test/annotate13.out [new file with mode: 0644] blob
test/annotate2.out [new file with mode: 0644] blob
test/annotate2.tab [new file with mode: 0644] blob
test/annotate2.vcf [new file with mode: 0644] blob
test/annotate3.out [new file with mode: 0644] blob
test/annotate3.vcf [new file with mode: 0644] blob
test/annotate4.hdr [new file with mode: 0644] blob
test/annotate4.out [new file with mode: 0644] blob
test/annotate4.vcf [new file with mode: 0644] blob
test/annotate5.out [new file with mode: 0644] blob
test/annotate6.out [new file with mode: 0644] blob
test/annotate7.out [new file with mode: 0644] blob
test/annotate8.out [new file with mode: 0644] blob
test/annotate9.out [new file with mode: 0644] blob
test/annotate9.vcf [new file with mode: 0644] blob
test/annots.vcf [new file with mode: 0644] blob
test/annots10.tab [new file with mode: 0644] blob
test/annots11.tab [new file with mode: 0644] blob
test/annots2.vcf [new file with mode: 0644] blob
test/annots4.tab [new file with mode: 0644] blob
test/annots4.vcf [new file with mode: 0644] blob
test/annots9.tab [new file with mode: 0644] blob
test/annots9.vcf [new file with mode: 0644] blob
test/check.chk [new file with mode: 0644] blob
test/check.gs.chrom.gen [new file with mode: 0644] blob
test/check.gs.chrom.samples [new file with mode: 0644] blob
test/check.gs.vcfids.gen [new file with mode: 0644] blob
test/check.gs.vcfids.samples [new file with mode: 0644] blob
test/check.gs.vcfids_chrom.gen [new file with mode: 0644] blob
test/check.gs.vcfids_chrom.samples [new file with mode: 0644] blob
test/check.vcf [new file with mode: 0644] blob
test/check_merge.chk [new file with mode: 0644] blob
test/concat.1.a.vcf [new file with mode: 0644] blob
test/concat.1.b.vcf [new file with mode: 0644] blob
test/concat.1.bcf.out [new file with mode: 0644] blob
test/concat.1.vcf.out [new file with mode: 0644] blob
test/concat.2.a.vcf [new file with mode: 0644] blob
test/concat.2.b.vcf [new file with mode: 0644] blob
test/concat.2.bcf.out [new file with mode: 0644] blob
test/concat.2.vcf.out [new file with mode: 0644] blob
test/concat.3.0.vcf [new file with mode: 0644] blob
test/concat.3.a.vcf [new file with mode: 0644] blob
test/concat.3.b.vcf [new file with mode: 0644] blob
test/concat.3.bcf.out [new file with mode: 0644] blob
test/concat.3.c.vcf [new file with mode: 0644] blob
test/concat.3.d.vcf [new file with mode: 0644] blob
test/concat.3.e.vcf [new file with mode: 0644] blob
test/concat.3.f.vcf [new file with mode: 0644] blob
test/concat.3.vcf.out [new file with mode: 0644] blob
test/concat.4.bcf.out [new file with mode: 0644] blob
test/concat.4.vcf.out [new file with mode: 0644] blob
test/consensus.1.chain [new file with mode: 0644] blob
test/consensus.1.out [new file with mode: 0644] blob
test/consensus.2.chain [new file with mode: 0644] blob
test/consensus.2.out [new file with mode: 0644] blob
test/consensus.3.chain [new file with mode: 0644] blob
test/consensus.3.out [new file with mode: 0644] blob
test/consensus.4.chain [new file with mode: 0644] blob
test/consensus.4.out [new file with mode: 0644] blob
test/consensus.5.out [new file with mode: 0644] blob
test/consensus.fa [new file with mode: 0644] blob
test/consensus.tab [new file with mode: 0644] blob
test/consensus.vcf [new file with mode: 0644] blob
test/consensus2.1.out [new file with mode: 0644] blob
test/consensus2.2.out [new file with mode: 0644] blob
test/consensus2.fa [new file with mode: 0644] blob
test/consensus2.vcf [new file with mode: 0644] blob
test/convert.23andme [new file with mode: 0644] blob
test/convert.23andme.vcf [new file with mode: 0644] blob
test/convert.gs.gt.gen [new file with mode: 0644] blob
test/convert.gs.gt.samples [new file with mode: 0644] blob
test/convert.gs.pl.gen [new file with mode: 0644] blob
test/convert.gs.pl.samples [new file with mode: 0644] blob
test/convert.gt.noHead.vcf [new file with mode: 0644] blob
test/convert.gt.vcf [new file with mode: 0644] blob
test/convert.gvcf.out [new file with mode: 0644] blob
test/convert.gvcf.vcf [new file with mode: 0644] blob
test/convert.hls.gt.hap [new file with mode: 0644] blob
test/convert.hls.gt.legend [new file with mode: 0644] blob
test/convert.hls.gt.samples [new file with mode: 0644] blob
test/convert.hls.haps [new file with mode: 0644] blob
test/convert.hls.legend [new file with mode: 0644] blob
test/convert.hls.samples [new file with mode: 0644] blob
test/convert.hs.gt.hap [new file with mode: 0644] blob
test/convert.hs.gt.samples [new file with mode: 0644] blob
test/convert.hs.hap [new file with mode: 0644] blob
test/convert.hs.sample [new file with mode: 0644] blob
test/convert.vcf [new file with mode: 0644] blob
test/csq.1.out [new file with mode: 0644] blob
test/csq.fa [new file with mode: 0644] blob
test/csq.fa.fai [new file with mode: 0644] blob
test/csq.gff3 [new file with mode: 0644] blob
test/csq.vcf [new file with mode: 0644] blob
test/csq/ENSG00000173376/ENSG00000173376.fa [new file with mode: 0644] blob
test/csq/ENSG00000173376/ENSG00000173376.fa.fai [new file with mode: 0644] blob
test/csq/ENSG00000173376/ENSG00000173376.gff [new file with mode: 0644] blob
test/csq/ENSG00000173376/synon.txt [new file with mode: 0644] blob
test/csq/ENSG00000173376/synon.vcf [new file with mode: 0644] blob
test/csq/ENST00000218032/ENST00000218032.fa [new file with mode: 0644] blob
test/csq/ENST00000218032/ENST00000218032.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000218032/ENST00000218032.gff [new file with mode: 0644] blob
test/csq/ENST00000218032/start-lost.txt [new file with mode: 0644] blob
test/csq/ENST00000218032/start-lost.txt-l [new file with mode: 0644] blob
test/csq/ENST00000218032/start-lost.vcf [new file with mode: 0644] blob
test/csq/ENST00000227471/ENST00000227471.fa [new file with mode: 0644] blob
test/csq/ENST00000227471/ENST00000227471.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000227471/ENST00000227471.gff [new file with mode: 0644] blob
test/csq/ENST00000227471/insert-splice-vs-frameshift.txt [new file with mode: 0644] blob
test/csq/ENST00000227471/insert-splice-vs-frameshift.vcf [new file with mode: 0644] blob
test/csq/ENST00000256452/ENST00000256452.fa [new file with mode: 0644] blob
test/csq/ENST00000256452/ENST00000256452.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000256452/ENST00000256452.gff [new file with mode: 0644] blob
test/csq/ENST00000256452/intron.txt [new file with mode: 0644] blob
test/csq/ENST00000256452/intron.vcf [new file with mode: 0644] blob
test/csq/ENST00000294661/ENST00000294661.fa [new file with mode: 0644] blob
test/csq/ENST00000294661/ENST00000294661.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000294661/ENST00000294661.gff [new file with mode: 0644] blob
test/csq/ENST00000294661/non-coding-boundary.txt [new file with mode: 0644] blob
test/csq/ENST00000294661/non-coding-boundary.txt-l [new file with mode: 0644] blob
test/csq/ENST00000294661/non-coding-boundary.vcf [new file with mode: 0644] blob
test/csq/ENST00000295641/ENST00000295641.fa [new file with mode: 0644] blob
test/csq/ENST00000295641/ENST00000295641.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000295641/ENST00000295641.gff [new file with mode: 0644] blob
test/csq/ENST00000295641/not-a-start-lost.txt [new file with mode: 0644] blob
test/csq/ENST00000295641/not-a-start-lost.txt-l [new file with mode: 0644] blob
test/csq/ENST00000295641/not-a-start-lost.vcf [new file with mode: 0644] blob
test/csq/ENST00000301246/15bp-insert.txt [new file with mode: 0644] blob
test/csq/ENST00000301246/15bp-insert.vcf [new file with mode: 0644] blob
test/csq/ENST00000301246/ENST00000301246.fa [new file with mode: 0644] blob
test/csq/ENST00000301246/ENST00000301246.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000301246/ENST00000301246.gff [new file with mode: 0644] blob
test/csq/ENST00000303039/ENST00000303039.fa [new file with mode: 0644] blob
test/csq/ENST00000303039/ENST00000303039.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000303039/ENST00000303039.gff [new file with mode: 0644] blob
test/csq/ENST00000303039/not-a-stop.txt [new file with mode: 0644] blob
test/csq/ENST00000303039/not-a-stop.txt-l [new file with mode: 0644] blob
test/csq/ENST00000303039/not-a-stop.vcf [new file with mode: 0644] blob
test/csq/ENST00000318249/ENST00000318249.fa [new file with mode: 0644] blob
test/csq/ENST00000318249/ENST00000318249.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000318249/ENST00000318249.gff [new file with mode: 0644] blob
test/csq/ENST00000318249/ascii-art.txt [new file with mode: 0644] blob
test/csq/ENST00000318249/start-lost.txt [new file with mode: 0644] blob
test/csq/ENST00000318249/start-lost.txt-l [new file with mode: 0644] blob
test/csq/ENST00000318249/start-lost.vcf [new file with mode: 0644] blob
test/csq/ENST00000318249/start-lost.vcf.ori [new file with mode: 0644] blob
test/csq/ENST00000318249/start-lost.vep [new file with mode: 0644] blob
test/csq/ENST00000329454/ENST00000329454.fa [new file with mode: 0644] blob
test/csq/ENST00000329454/ENST00000329454.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000329454/ENST00000329454.gff [new file with mode: 0644] blob
test/csq/ENST00000329454/boundary-deletion.txt [new file with mode: 0644] blob
test/csq/ENST00000329454/boundary-deletion.txt-l [new file with mode: 0644] blob
test/csq/ENST00000329454/boundary-deletion.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/ENST00000341065.fa [new file with mode: 0644] blob
test/csq/ENST00000341065/ENST00000341065.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000341065/ENST00000341065.gff [new file with mode: 0644] blob
test/csq/ENST00000341065/ascii-art.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/ascii-art.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/frame1.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/frame1.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/frame1.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/frame2.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/frame2.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/frame2.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/frame3.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/frame3.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/frame3.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/not-a-start-lost.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/not-a-start-lost.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/not-a-start-lost.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor1.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor1.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor1.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor2.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor2.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor2.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor3.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor3.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor3.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor4.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor4.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor4.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor5.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor5.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor5.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor6.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor6.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor6.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor7.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor7.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor7.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor8.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor8.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor8.vcf [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor9.txt [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor9.txt-l [new file with mode: 0644] blob
test/csq/ENST00000341065/splice-acceptor-donor9.vcf [new file with mode: 0644] blob
test/csq/ENST00000357367/ENST00000357367.fa [new file with mode: 0644] blob
test/csq/ENST00000357367/ENST00000357367.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000357367/ENST00000357367.gff [new file with mode: 0644] blob
test/csq/ENST00000357367/stop-retained.txt [new file with mode: 0644] blob
test/csq/ENST00000357367/stop-retained.vcf [new file with mode: 0644] blob
test/csq/ENST00000368801/ENST00000368801.fa [new file with mode: 0644] blob
test/csq/ENST00000368801/ENST00000368801.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000368801/ENST00000368801.gff [new file with mode: 0644] blob
test/csq/ENST00000368801/compound-lost.txt [new file with mode: 0644] blob
test/csq/ENST00000368801/compound-lost.vcf [new file with mode: 0644] blob
test/csq/ENST00000373833/ENST00000373833.fa [new file with mode: 0644] blob
test/csq/ENST00000373833/ENST00000373833.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000373833/ENST00000373833.gff [new file with mode: 0644] blob
test/csq/ENST00000373833/boundary-insertion.txt [new file with mode: 0644] blob
test/csq/ENST00000373833/boundary-insertion.txt-l [new file with mode: 0644] blob
test/csq/ENST00000373833/boundary-insertion.vcf [new file with mode: 0644] blob
test/csq/ENST00000375992/ENST00000375992.fa [new file with mode: 0644] blob
test/csq/ENST00000375992/ENST00000375992.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000375992/ENST00000375992.gff [new file with mode: 0644] blob
test/csq/ENST00000375992/incorrect-synon-del-not-start-lost.txt [new file with mode: 0644] blob
test/csq/ENST00000375992/incorrect-synon-del-not-start-lost.vcf [new file with mode: 0644] blob
test/csq/ENST00000378322/ENST00000378322.fa [new file with mode: 0644] blob
test/csq/ENST00000378322/ENST00000378322.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000378322/ENST00000378322.gff [new file with mode: 0644] blob
test/csq/ENST00000378322/ascii-art.txt [new file with mode: 0644] blob
test/csq/ENST00000378322/ascii-art.txt-l [new file with mode: 0644] blob
test/csq/ENST00000378322/end-overlap-tscript.txt [new file with mode: 0644] blob
test/csq/ENST00000378322/end-overlap-tscript.txt-l [new file with mode: 0644] blob
test/csq/ENST00000378322/end-overlap-tscript.vcf [new file with mode: 0644] blob
test/csq/ENST00000381157/ENST00000381157.fa [new file with mode: 0644] blob
test/csq/ENST00000381157/ENST00000381157.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000381157/ENST00000381157.gff [new file with mode: 0644] blob
test/csq/ENST00000381157/haploid-diploid.txt [new file with mode: 0644] blob
test/csq/ENST00000381157/haploid-diploid.vcf [new file with mode: 0644] blob
test/csq/ENST00000382647/ENST00000382647.fa [new file with mode: 0644] blob
test/csq/ENST00000382647/ENST00000382647.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000382647/ENST00000382647.gff [new file with mode: 0644] blob
test/csq/ENST00000382647/synon-splice-region-insert.txt [new file with mode: 0644] blob
test/csq/ENST00000382647/synon-splice-region-insert.vcf [new file with mode: 0644] blob
test/csq/ENST00000390520/ENST00000390520.fa [new file with mode: 0644] blob
test/csq/ENST00000390520/ENST00000390520.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000390520/ENST00000390520.gff [new file with mode: 0644] blob
test/csq/ENST00000390520/deletion-overlap.txt [new file with mode: 0644] blob
test/csq/ENST00000390520/deletion-overlap.vcf [new file with mode: 0644] blob
test/csq/ENST00000409523/ENST00000409523.fa [new file with mode: 0644] blob
test/csq/ENST00000409523/ENST00000409523.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000409523/ENST00000409523.gff [new file with mode: 0644] blob
test/csq/ENST00000409523/ascii-art.txt [new file with mode: 0644] blob
test/csq/ENST00000409523/long-overlapping-del.txt [new file with mode: 0644] blob
test/csq/ENST00000409523/long-overlapping-del.vcf [new file with mode: 0644] blob
test/csq/ENST00000410009/ENST00000410009.fa [new file with mode: 0644] blob
test/csq/ENST00000410009/ENST00000410009.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000410009/ENST00000410009.gff [new file with mode: 0644] blob
test/csq/ENST00000410009/ascii-art.txt [new file with mode: 0644] blob
test/csq/ENST00000410009/frameshift.txt [new file with mode: 0644] blob
test/csq/ENST00000410009/frameshift.vcf [new file with mode: 0644] blob
test/csq/ENST00000413103/ENST00000413103.fa [new file with mode: 0644] blob
test/csq/ENST00000413103/ENST00000413103.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000413103/ENST00000413103.gff [new file with mode: 0644] blob
test/csq/ENST00000413103/long-deletion.txt [new file with mode: 0644] blob
test/csq/ENST00000413103/long-deletion.vcf [new file with mode: 0644] blob
test/csq/ENST00000420670/ENST00000420670.fa [new file with mode: 0644] blob
test/csq/ENST00000420670/ENST00000420670.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000420670/ENST00000420670.gff [new file with mode: 0644] blob
test/csq/ENST00000420670/start-stop-lost.txt [new file with mode: 0644] blob
test/csq/ENST00000420670/start-stop-lost.vcf [new file with mode: 0644] blob
test/csq/ENST00000423372/ENST00000423372.fa [new file with mode: 0644] blob
test/csq/ENST00000423372/ENST00000423372.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000423372/ENST00000423372.gff [new file with mode: 0644] blob
test/csq/ENST00000423372/insert3.txt [new file with mode: 0644] blob
test/csq/ENST00000423372/insert3.txt-l [new file with mode: 0644] blob
test/csq/ENST00000423372/insert3.vcf [new file with mode: 0644] blob
test/csq/ENST00000423372/snps.txt [new file with mode: 0644] blob
test/csq/ENST00000423372/snps.txt-l [new file with mode: 0644] blob
test/csq/ENST00000423372/snps.vcf [new file with mode: 0644] blob
test/csq/ENST00000436063/ENST00000436063.fa [new file with mode: 0644] blob
test/csq/ENST00000436063/ENST00000436063.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000436063/ENST00000436063.gff [new file with mode: 0644] blob
test/csq/ENST00000436063/insert-before-utr.txt [new file with mode: 0644] blob
test/csq/ENST00000436063/insert-before-utr.vcf [new file with mode: 0644] blob
test/csq/ENST00000448695/ENST00000448695.fa [new file with mode: 0644] blob
test/csq/ENST00000448695/ENST00000448695.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000448695/ENST00000448695.gff [new file with mode: 0644] blob
test/csq/ENST00000448695/syn-and-splice-reg.txt [new file with mode: 0644] blob
test/csq/ENST00000448695/syn-and-splice-reg.vcf [new file with mode: 0644] blob
test/csq/ENST00000479739/ENST00000479739.fa [new file with mode: 0644] blob
test/csq/ENST00000479739/ENST00000479739.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000479739/ENST00000479739.gff [new file with mode: 0644] blob
test/csq/ENST00000479739/short-cds-start-lost.txt [new file with mode: 0644] blob
test/csq/ENST00000479739/short-cds-start-lost.txt-l [new file with mode: 0644] blob
test/csq/ENST00000479739/short-cds-start-lost.vcf [new file with mode: 0644] blob
test/csq/ENST00000519442/ENST00000519442.fa [new file with mode: 0644] blob
test/csq/ENST00000519442/ENST00000519442.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000519442/ENST00000519442.gff [new file with mode: 0644] blob
test/csq/ENST00000519442/synon-splice-region-del.txt [new file with mode: 0644] blob
test/csq/ENST00000519442/synon-splice-region-del.vcf [new file with mode: 0644] blob
test/csq/ENST00000520795/ENST00000520795.fa [new file with mode: 0644] blob
test/csq/ENST00000520795/ENST00000520795.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000520795/ENST00000520795.gff [new file with mode: 0644] blob
test/csq/ENST00000520795/ascii-art.txt [new file with mode: 0644] blob
test/csq/ENST00000520795/ascii-art.txt-l [new file with mode: 0644] blob
test/csq/ENST00000520795/long-inside-del.txt [new file with mode: 0644] blob
test/csq/ENST00000520795/long-inside-del.txt-l [new file with mode: 0644] blob
test/csq/ENST00000520795/long-inside-del.vcf [new file with mode: 0644] blob
test/csq/ENST00000520868/ENST00000520868.fa [new file with mode: 0644] blob
test/csq/ENST00000520868/ENST00000520868.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000520868/ENST00000520868.gff [new file with mode: 0644] blob
test/csq/ENST00000520868/ascii-art.txt [new file with mode: 0644] blob
test/csq/ENST00000520868/long-deletion.txt [new file with mode: 0644] blob
test/csq/ENST00000520868/long-deletion.vcf [new file with mode: 0644] blob
test/csq/ENST00000528237/ENST00000528237.fa [new file with mode: 0644] blob
test/csq/ENST00000528237/ENST00000528237.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000528237/ENST00000528237.gff [new file with mode: 0644] blob
test/csq/ENST00000528237/retained-stop-incomplete-cds.txt [new file with mode: 0644] blob
test/csq/ENST00000528237/retained-stop-incomplete-cds.vcf [new file with mode: 0644] blob
test/csq/ENST00000536784/ENST00000536784.fa [new file with mode: 0644] blob
test/csq/ENST00000536784/ENST00000536784.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000536784/ENST00000536784.gff [new file with mode: 0644] blob
test/csq/ENST00000536784/not-a-start-lost.txt [new file with mode: 0644] blob
test/csq/ENST00000536784/not-a-start-lost.txt-l [new file with mode: 0644] blob
test/csq/ENST00000536784/not-a-start-lost.vcf [new file with mode: 0644] blob
test/csq/ENST00000542803/ENST00000542803.fa [new file with mode: 0644] blob
test/csq/ENST00000542803/ENST00000542803.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000542803/ENST00000542803.gff [new file with mode: 0644] blob
test/csq/ENST00000542803/splice-region.txt [new file with mode: 0644] blob
test/csq/ENST00000542803/splice-region.txt-l [new file with mode: 0644] blob
test/csq/ENST00000542803/splice-region.vcf [new file with mode: 0644] blob
test/csq/ENST00000543077/ENST00000543077.fa [new file with mode: 0644] blob
test/csq/ENST00000543077/ENST00000543077.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000543077/ENST00000543077.gff [new file with mode: 0644] blob
test/csq/ENST00000543077/not-a-start-lost.txt [new file with mode: 0644] blob
test/csq/ENST00000543077/not-a-start-lost.txt-l [new file with mode: 0644] blob
test/csq/ENST00000543077/not-a-start-lost.vcf [new file with mode: 0644] blob
test/csq/ENST00000545279/ENST00000545279.fa [new file with mode: 0644] blob
test/csq/ENST00000545279/ENST00000545279.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000545279/ENST00000545279.gff [new file with mode: 0644] blob
test/csq/ENST00000545279/splice-region-insert.txt [new file with mode: 0644] blob
test/csq/ENST00000545279/splice-region-insert.vcf [new file with mode: 0644] blob
test/csq/ENST00000557788/ENST00000557788.fa [new file with mode: 0644] blob
test/csq/ENST00000557788/ENST00000557788.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000557788/ENST00000557788.gff [new file with mode: 0644] blob
test/csq/ENST00000557788/ascii-art.txt [new file with mode: 0644] blob
test/csq/ENST00000557788/long-overlap-del.txt [new file with mode: 0644] blob
test/csq/ENST00000557788/long-overlap-del.vcf [new file with mode: 0644] blob
test/csq/ENST00000573314/ENST00000573314.fa [new file with mode: 0644] blob
test/csq/ENST00000573314/ENST00000573314.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000573314/ENST00000573314.gff [new file with mode: 0644] blob
test/csq/ENST00000573314/ascii-art.txt [new file with mode: 0644] blob
test/csq/ENST00000573314/ascii-art.txt-l [new file with mode: 0644] blob
test/csq/ENST00000573314/incorrect-insertion-overlap.txt [new file with mode: 0644] blob
test/csq/ENST00000573314/incorrect-insertion-overlap.txt-l [new file with mode: 0644] blob
test/csq/ENST00000573314/incorrect-insertion-overlap.vcf [new file with mode: 0644] blob
test/csq/ENST00000593942/ENST00000593942.fa [new file with mode: 0644] blob
test/csq/ENST00000593942/ENST00000593942.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000593942/ENST00000593942.gff [new file with mode: 0644] blob
test/csq/ENST00000593942/last-codon-deletion.txt [new file with mode: 0644] blob
test/csq/ENST00000593942/last-codon-deletion.vcf [new file with mode: 0644] blob
test/csq/ENST00000624631/ENST00000624631.fa [new file with mode: 0644] blob
test/csq/ENST00000624631/ENST00000624631.fa.fai [new file with mode: 0644] blob
test/csq/ENST00000624631/ENST00000624631.gff [new file with mode: 0644] blob
test/csq/ENST00000624631/ambiguous.txt [new file with mode: 0644] blob
test/csq/ENST00000624631/ambiguous.vcf [new file with mode: 0644] blob
test/csq/ENST00000624631/ascii-art.txt [new file with mode: 0644] blob
test/csq/ENST00000624631/segfault.txt.new [new file with mode: 0644] blob
test/csq/make-csq-test [new file with mode: 0755] blob
test/csq/sort-csq [new file with mode: 0755] blob
test/dosage.out [new file with mode: 0644] blob
test/empty.idx.out [new file with mode: 0644] blob
test/empty.idx_count.out [new file with mode: 0644] blob
test/empty.vcf [new file with mode: 0644] blob
test/ex1.gtf.gz [new file with mode: 0644] blob
test/ex2.vcf [new file with mode: 0644] blob
test/ex3.sam [new file with mode: 0644] blob
test/fill-AN-AC.out [new file with mode: 0644] blob
test/fill-tags-hemi.1.out [new file with mode: 0644] blob
test/fill-tags-hemi.2.out [new file with mode: 0644] blob
test/fill-tags-hemi.vcf [new file with mode: 0644] blob
test/fill-tags.2.out [new file with mode: 0644] blob
test/fill-tags.3.out [new file with mode: 0644] blob
test/fill-tags.3.smpl [new file with mode: 0644] blob
test/fill-tags.out [new file with mode: 0644] blob
test/filter-missing-floats.vcf [new file with mode: 0644] blob
test/filter.1.out [new file with mode: 0644] blob
test/filter.1.vcf [new file with mode: 0644] blob
test/filter.10.out [new file with mode: 0644] blob
test/filter.11.out [new file with mode: 0644] blob
test/filter.2.out [new file with mode: 0644] blob
test/filter.2.vcf [new file with mode: 0644] blob
test/filter.3.out [new file with mode: 0644] blob
test/filter.3.vcf [new file with mode: 0644] blob
test/filter.4.out [new file with mode: 0644] blob
test/filter.4.vcf [new file with mode: 0644] blob
test/filter.5.out [new file with mode: 0644] blob
test/filter.6.out [new file with mode: 0644] blob
test/filter.7.out [new file with mode: 0644] blob
test/filter.8.out [new file with mode: 0644] blob
test/filter.9.out [new file with mode: 0644] blob
test/fixploidy.out [new file with mode: 0644] blob
test/fixploidy.ploidy [new file with mode: 0644] blob
test/fixploidy.samples [new file with mode: 0644] blob
test/fixploidy.vcf [new file with mode: 0644] blob
test/fixref.1.out [new file with mode: 0644] blob
test/fixref.vcf [new file with mode: 0644] blob
test/guess-ploidy.GL.out [new file with mode: 0644] blob
test/guess-ploidy.PL.out [new file with mode: 0644] blob
test/gvcf.fa [new file with mode: 0644] blob
test/gvcf.fa.fai [new file with mode: 0644] blob
test/gvcf.merge.1.out [new file with mode: 0644] blob
test/gvcf.merge.1.vcf [new file with mode: 0644] blob
test/gvcf.merge.2.vcf [new file with mode: 0644] blob
test/gvcf.merge.3.vcf [new file with mode: 0644] blob
test/idx.out [new file with mode: 0644] blob
test/idx.vcf [new file with mode: 0644] blob
test/idx_count.out [new file with mode: 0644] blob
test/isec.a.vcf [new file with mode: 0644] blob
test/isec.ab.C.out [new file with mode: 0644] blob
test/isec.ab.any.out [new file with mode: 0644] blob
test/isec.ab.both.out [new file with mode: 0644] blob
test/isec.ab.flt.out [new file with mode: 0644] blob
test/isec.ab.out [new file with mode: 0644] blob
test/isec.b.vcf [new file with mode: 0644] blob
test/isec.tab [new file with mode: 0644] blob
test/isec.tab.out [new file with mode: 0644] blob
test/large_chrom.20.1.2147483647.out [new file with mode: 0644] blob
test/large_chrom_csi_limit.20.1.2147483647.out [new file with mode: 0644] blob
test/large_chrom_csi_limit.vcf [new file with mode: 0644] blob
test/many.alleles.trim.out [new file with mode: 0644] blob
test/many.alleles.vcf [new file with mode: 0644] blob
test/mendelian.1.out [new file with mode: 0644] blob
test/mendelian.2.out [new file with mode: 0644] blob
test/mendelian.3.out [new file with mode: 0644] blob
test/mendelian.vcf [new file with mode: 0644] blob
test/merge.2.a.vcf [new file with mode: 0644] blob
test/merge.2.all.out [new file with mode: 0644] blob
test/merge.2.b.vcf [new file with mode: 0644] blob
test/merge.2.both.out [new file with mode: 0644] blob
test/merge.2.none.out [new file with mode: 0644] blob
test/merge.3.a.vcf [new file with mode: 0644] blob
test/merge.3.b.vcf [new file with mode: 0644] blob
test/merge.3.out [new file with mode: 0644] blob
test/merge.4.a.vcf [new file with mode: 0644] blob
test/merge.4.b.vcf [new file with mode: 0644] blob
test/merge.4.out [new file with mode: 0644] blob
test/merge.5.a.vcf [new file with mode: 0644] blob
test/merge.5.b.vcf [new file with mode: 0644] blob
test/merge.5.out [new file with mode: 0644] blob
test/merge.a.chk [new file with mode: 0644] blob
test/merge.a.vcf [new file with mode: 0644] blob
test/merge.abc.2.out [new file with mode: 0644] blob
test/merge.abc.3.out [new file with mode: 0644] blob
test/merge.abc.out [new file with mode: 0644] blob
test/merge.b.vcf [new file with mode: 0644] blob
test/merge.c.vcf [new file with mode: 0644] blob
test/merge.gvcf.2.a.vcf [new file with mode: 0644] blob
test/merge.gvcf.2.b.vcf [new file with mode: 0644] blob
test/merge.gvcf.2.c.vcf [new file with mode: 0644] blob
test/merge.gvcf.2.out [new file with mode: 0644] blob
test/missing.vcf [new file with mode: 0644] blob
test/missing2ref.out [new file with mode: 0644] blob
test/mpileup.1.out [new file with mode: 0644] blob
test/mpileup.2.out [new file with mode: 0644] blob
test/mpileup.2.samples [new file with mode: 0644] blob
test/mpileup.X.2.out [new file with mode: 0644] blob
test/mpileup.X.out [new file with mode: 0644] blob
test/mpileup.X.vcf [new file with mode: 0644] blob
test/mpileup.c.1.out [new file with mode: 0644] blob
test/mpileup.c.X.2.out [new file with mode: 0644] blob
test/mpileup.c.X.out [new file with mode: 0644] blob
test/mpileup.c.X.vcf [new file with mode: 0644] blob
test/mpileup.c.vcf [new file with mode: 0644] blob
test/mpileup.cAls.out [new file with mode: 0644] blob
test/mpileup.ped [new file with mode: 0644] blob
test/mpileup.ploidy [new file with mode: 0644] blob
test/mpileup.samples [new file with mode: 0644] blob
test/mpileup.tab [new file with mode: 0644] blob
test/mpileup.vcf [new file with mode: 0644] blob
test/mpileup/mpileup.1.bam [new file with mode: 0644] blob
test/mpileup/mpileup.1.bam.bai [new file with mode: 0644] blob
test/mpileup/mpileup.1.cram [new file with mode: 0644] blob
test/mpileup/mpileup.1.cram.crai [new file with mode: 0644] blob
test/mpileup/mpileup.1.out [new file with mode: 0644] blob
test/mpileup/mpileup.1.sam [new file with mode: 0644] blob
test/mpileup/mpileup.10.out [new file with mode: 0644] blob
test/mpileup/mpileup.11.out [new file with mode: 0644] blob
test/mpileup/mpileup.2.bam [new file with mode: 0644] blob
test/mpileup/mpileup.2.bam.bai [new file with mode: 0644] blob
test/mpileup/mpileup.2.cram [new file with mode: 0644] blob
test/mpileup/mpileup.2.cram.crai [new file with mode: 0644] blob
test/mpileup/mpileup.2.out [new file with mode: 0644] blob
test/mpileup/mpileup.2.sam [new file with mode: 0644] blob
test/mpileup/mpileup.3.bam [new file with mode: 0644] blob
test/mpileup/mpileup.3.bam.bai [new file with mode: 0644] blob
test/mpileup/mpileup.3.cram [new file with mode: 0644] blob
test/mpileup/mpileup.3.cram.crai [new file with mode: 0644] blob
test/mpileup/mpileup.3.out [new file with mode: 0644] blob
test/mpileup/mpileup.3.sam [new file with mode: 0644] blob
test/mpileup/mpileup.4.bam [new file with mode: 0644] blob
test/mpileup/mpileup.4.cram [new file with mode: 0644] blob
test/mpileup/mpileup.4.out [new file with mode: 0644] blob
test/mpileup/mpileup.4.sam [new file with mode: 0644] blob
test/mpileup/mpileup.5.out [new file with mode: 0644] blob
test/mpileup/mpileup.6.out [new file with mode: 0644] blob
test/mpileup/mpileup.7.out [new file with mode: 0644] blob
test/mpileup/mpileup.8.out [new file with mode: 0644] blob
test/mpileup/mpileup.9.out [new file with mode: 0644] blob
test/mpileup/mpileup.ref.fa [new file with mode: 0644] blob
test/mpileup/mpileup.ref.fa.fai [new file with mode: 0644] blob
test/mplp.10.samples [new file with mode: 0644] blob
test/mplp.11.rgs [new file with mode: 0644] blob
test/mplp.9.samples [new file with mode: 0644] blob
test/mplp.samples [new file with mode: 0644] blob
test/norm.fa [new file with mode: 0644] blob
test/norm.fa.fai [new file with mode: 0644] blob
test/norm.merge.2.out [new file with mode: 0644] blob
test/norm.merge.2.vcf [new file with mode: 0644] blob
test/norm.merge.3.out [new file with mode: 0644] blob
test/norm.merge.3.vcf [new file with mode: 0644] blob
test/norm.merge.out [new file with mode: 0644] blob
test/norm.merge.strict.out [new file with mode: 0644] blob
test/norm.merge.vcf [new file with mode: 0644] blob
test/norm.out [new file with mode: 0644] blob
test/norm.setref.out [new file with mode: 0644] blob
test/norm.setref.vcf [new file with mode: 0644] blob
test/norm.split.2.out [new file with mode: 0644] blob
test/norm.split.2.vcf [new file with mode: 0644] blob
test/norm.split.and.norm.out [new file with mode: 0644] blob
test/norm.split.out [new file with mode: 0644] blob
test/norm.split.vcf [new file with mode: 0644] blob
test/norm.telomere.out [new file with mode: 0644] blob
test/norm.telomere.vcf [new file with mode: 0644] blob
test/norm.vcf [new file with mode: 0644] blob
test/plugin-missing2ref.out.vcf [new file with mode: 0644] blob
test/plugin-missing2ref.vcf [new file with mode: 0644] blob
test/plugin1.vcf [new file with mode: 0644] blob
test/query.10.out [new file with mode: 0644] blob
test/query.11.out [new file with mode: 0644] blob
test/query.12.out [new file with mode: 0644] blob
test/query.13.out [new file with mode: 0644] blob
test/query.14.out [new file with mode: 0644] blob
test/query.15.out [new file with mode: 0644] blob
test/query.16.out [new file with mode: 0644] blob
test/query.17.out [new file with mode: 0644] blob
test/query.18.out [new file with mode: 0644] blob
test/query.19.out [new file with mode: 0644] blob
test/query.2.out [new file with mode: 0644] blob
test/query.2.vcf [new file with mode: 0644] blob
test/query.20.out [new file with mode: 0644] blob
test/query.21.out [new file with mode: 0644] blob
test/query.22.out [new file with mode: 0644] blob
test/query.23.out [new file with mode: 0644] blob
test/query.24.out [new file with mode: 0644] blob
test/query.25.out [new file with mode: 0644] blob
test/query.26.out [new file with mode: 0644] blob
test/query.27.out [new file with mode: 0644] blob
test/query.28.out [new file with mode: 0644] blob
test/query.29.out [new file with mode: 0644] blob
test/query.3.out [new file with mode: 0644] blob
test/query.30.out [new file with mode: 0644] blob
test/query.31.out [new file with mode: 0644] blob
test/query.32.out [new file with mode: 0644] blob
test/query.33.out [new file with mode: 0644] blob
test/query.4.out [new file with mode: 0644] blob
test/query.5.out [new file with mode: 0644] blob
test/query.6.out [new file with mode: 0644] blob
test/query.7.out [new file with mode: 0644] blob
test/query.8.out [new file with mode: 0644] blob
test/query.9.out [new file with mode: 0644] blob
test/query.filter-type.vcf [new file with mode: 0644] blob
test/query.filter.2.vcf [new file with mode: 0644] blob
test/query.filter.vcf [new file with mode: 0644] blob
test/query.out [new file with mode: 0644] blob
test/query.vcf [new file with mode: 0644] blob
test/ref.out [new file with mode: 0644] blob
test/ref.vcf [new file with mode: 0644] blob
test/regions.out [new file with mode: 0644] blob
test/regions.tab [new file with mode: 0644] blob
test/regions.vcf [new file with mode: 0644] blob
test/reheader.1.out [new file with mode: 0644] blob
test/reheader.1.out.bcf [new file with mode: 0644] blob
test/reheader.2.out [new file with mode: 0644] blob
test/reheader.3.out [new file with mode: 0644] blob
test/reheader.4.out [new file with mode: 0644] blob
test/reheader.empty.hdr [new file with mode: 0644] blob
test/reheader.empty.out [new file with mode: 0644] blob
test/reheader.hdr [new file with mode: 0644] blob
test/reheader.samples [new file with mode: 0644] blob
test/reheader.samples2 [new file with mode: 0644] blob
test/reheader.samples3 [new file with mode: 0644] blob
test/reheader.samples4 [new file with mode: 0644] blob
test/reheader.vcf [new file with mode: 0644] blob
test/setGT.1.out [new file with mode: 0644] blob
test/setGT.vcf [new file with mode: 0644] blob
test/stats.B.chk [new file with mode: 0644] blob
test/stats.a.vcf [new file with mode: 0644] blob
test/stats.b.vcf [new file with mode: 0644] blob
test/stats.chk [new file with mode: 0644] blob
test/tabix.1.3000151.out [new file with mode: 0644] blob
test/tabix.2.3199812.out [new file with mode: 0644] blob
test/test-rbuf.c [new file with mode: 0644] blob
test/test-regidx.c [new file with mode: 0644] blob
test/test.pl [new file with mode: 0755] blob
test/trio.out [new file with mode: 0644] blob
test/trio.ped [new file with mode: 0644] blob
test/trio.vcf [new file with mode: 0644] blob
test/vcf2sex.out [new file with mode: 0644] blob
test/vcf2sex.vcf [new file with mode: 0644] blob
test/view.1.out [new file with mode: 0644] blob
test/view.10.out [new file with mode: 0644] blob
test/view.2.out [new file with mode: 0644] blob
test/view.3.out [new file with mode: 0644] blob
test/view.4.out [new file with mode: 0644] blob
test/view.5.out [new file with mode: 0644] blob
test/view.6.out [new file with mode: 0644] blob
test/view.7.out [new file with mode: 0644] blob
test/view.8.out [new file with mode: 0644] blob
test/view.9.out [new file with mode: 0644] blob
test/view.GL.vcf [new file with mode: 0644] blob
test/view.GP.vcf [new file with mode: 0644] blob
test/view.GT.vcf [new file with mode: 0644] blob
test/view.GTisec.H.out [new file with mode: 0644] blob
test/view.GTisec.Hm.out [new file with mode: 0644] blob
test/view.GTisec.Hmv.out [new file with mode: 0644] blob
test/view.GTisec.Hv.out [new file with mode: 0644] blob
test/view.GTisec.m.out [new file with mode: 0644] blob
test/view.GTisec.mv.out [new file with mode: 0644] blob
test/view.GTisec.out [new file with mode: 0644] blob
test/view.GTisec.v.out [new file with mode: 0644] blob
test/view.GTsubset.NA1.out [new file with mode: 0644] blob
test/view.GTsubset.NA1NA2.out [new file with mode: 0644] blob
test/view.GTsubset.NA1NA2NA3.out [new file with mode: 0644] blob
test/view.PL.vcf [new file with mode: 0644] blob
test/view.chrs.out [new file with mode: 0644] blob
test/view.chrs.tab [new file with mode: 0644] blob
test/view.chrs.vcf [new file with mode: 0644] blob
test/view.dropgenotypes.noheader.out [new file with mode: 0644] blob
test/view.dropgenotypes.out [new file with mode: 0644] blob
test/view.exclude.out [new file with mode: 0644] blob
test/view.filter.1.out [new file with mode: 0644] blob
test/view.filter.10.out [new file with mode: 0644] blob
test/view.filter.11.out [new file with mode: 0644] blob
test/view.filter.2.out [new file with mode: 0644] blob
test/view.filter.3.out [new file with mode: 0644] blob
test/view.filter.4.out [new file with mode: 0644] blob
test/view.filter.5.out [new file with mode: 0644] blob
test/view.filter.6.out [new file with mode: 0644] blob
test/view.filter.7.out [new file with mode: 0644] blob
test/view.filter.8.out [new file with mode: 0644] blob
test/view.filter.9.out [new file with mode: 0644] blob
test/view.filter.annovar.1.out [new file with mode: 0644] blob
test/view.filter.annovar.2.out [new file with mode: 0644] blob
test/view.filter.annovar.3.out [new file with mode: 0644] blob
test/view.filter.annovar.vcf [new file with mode: 0644] blob
test/view.filter.vcf [new file with mode: 0644] blob
test/view.minmaxac.1.out [new file with mode: 0644] blob
test/view.minmaxac.2.out [new file with mode: 0644] blob
test/view.minmaxac.vcf [new file with mode: 0644] blob
test/view.omitgenotypes.out [new file with mode: 0644] blob
test/view.omitgenotypes.vcf [new file with mode: 0644] blob
test/view.vcf [new file with mode: 0644] blob
test/view.vectors.2.vcf [new file with mode: 0644] blob
test/view.vectors.A.out [new file with mode: 0644] blob
test/view.vectors.B.out [new file with mode: 0644] blob
test/view.vectors.C.out [new file with mode: 0644] blob
test/view.vectors.vcf [new file with mode: 0644] blob
tsv2vcf.c [new file with mode: 0644] blob
tsv2vcf.h [new file with mode: 0644] blob
vcfannotate.c [new file with mode: 0644] blob
vcfcall.c [new file with mode: 0644] blob
vcfcnv.c [new file with mode: 0644] blob
vcfconcat.c [new file with mode: 0644] blob
vcfconvert.c [new file with mode: 0644] blob
vcffilter.c [new file with mode: 0644] blob
vcfgtcheck.c [new file with mode: 0644] blob
vcfindex.c [new file with mode: 0644] blob
vcfisec.c [new file with mode: 0644] blob
vcfmerge.c [new file with mode: 0644] blob
vcfnorm.c [new file with mode: 0644] blob
vcfplugin.c [new file with mode: 0644] blob
vcfquery.c [new file with mode: 0644] blob
vcfroh.c [new file with mode: 0644] blob
vcfsom.c [new file with mode: 0644] blob
vcfstats.c [new file with mode: 0644] blob
vcfview.c [new file with mode: 0644] blob
vcmp.c [new file with mode: 0644] blob
vcmp.h [new file with mode: 0644] blob
version.c [new file with mode: 0644] blob
Unnamed repository; edit this file 'description' to name the repository.