Imported Upstream version 0.8.3+ds1
authorAfif Elghraoui <afif@ghraoui.name>
Thu, 25 Jun 2015 02:27:30 +0000 (19:27 -0700)
committerAfif Elghraoui <afif@ghraoui.name>
Thu, 25 Jun 2015 02:27:30 +0000 (19:27 -0700)
commit3cbc6e03eafa32ac25f5d6bedd8c7019568f7d7c
tree761a3a10c8d71e0296a58a58b58558237a2989c2
parent91c30fda77e187b3a1b240064771a90168ab09e6
Imported Upstream version 0.8.3+ds1
144 files changed:
htslib/INSTALL [deleted file]
htslib/LICENSE [deleted file]
htslib/Makefile [deleted file]
htslib/NEWS [deleted file]
htslib/README [deleted file]
htslib/bgzf.c [deleted file]
htslib/bgzip.c [deleted file]
htslib/config.h [deleted file]
htslib/config.mk [deleted file]
htslib/config.mk.in [deleted file]
htslib/configure [deleted file]
htslib/configure.ac [deleted file]
htslib/cram/cram.h [deleted file]
htslib/cram/cram_codecs.c [deleted file]
htslib/cram/cram_codecs.h [deleted file]
htslib/cram/cram_decode.c [deleted file]
htslib/cram/cram_decode.h [deleted file]
htslib/cram/cram_encode.c [deleted file]
htslib/cram/cram_encode.h [deleted file]
htslib/cram/cram_index.c [deleted file]
htslib/cram/cram_index.h [deleted file]
htslib/cram/cram_io.c [deleted file]
htslib/cram/cram_io.h [deleted file]
htslib/cram/cram_samtools.c [deleted file]
htslib/cram/cram_samtools.h [deleted file]
htslib/cram/cram_stats.c [deleted file]
htslib/cram/cram_stats.h [deleted file]
htslib/cram/cram_structs.h [deleted file]
htslib/cram/files.c [deleted file]
htslib/cram/mFILE.c [deleted file]
htslib/cram/mFILE.h [deleted file]
htslib/cram/md5.c [deleted file]
htslib/cram/md5.h [deleted file]
htslib/cram/misc.h [deleted file]
htslib/cram/open_trace_file.c [deleted file]
htslib/cram/open_trace_file.h [deleted file]
htslib/cram/os.h [deleted file]
htslib/cram/pooled_alloc.c [deleted file]
htslib/cram/pooled_alloc.h [deleted file]
htslib/cram/rANS_byte.h [deleted file]
htslib/cram/rANS_static.c [deleted file]
htslib/cram/rANS_static.h [deleted file]
htslib/cram/sam_header.c [deleted file]
htslib/cram/sam_header.h [deleted file]
htslib/cram/string_alloc.c [deleted file]
htslib/cram/string_alloc.h [deleted file]
htslib/cram/thread_pool.c [deleted file]
htslib/cram/thread_pool.h [deleted file]
htslib/cram/vlen.c [deleted file]
htslib/cram/vlen.h [deleted file]
htslib/cram/zfio.c [deleted file]
htslib/cram/zfio.h [deleted file]
htslib/faidx.5 [deleted file]
htslib/faidx.c [deleted file]
htslib/hfile.c [deleted file]
htslib/hfile_internal.h [deleted file]
htslib/hfile_irods.c [deleted file]
htslib/hfile_net.c [deleted file]
htslib/hts.c [deleted file]
htslib/htsfile.1 [deleted file]
htslib/htsfile.c [deleted file]
htslib/htslib.mk [deleted file]
htslib/htslib.pc.in [deleted file]
htslib/htslib/bgzf.h [deleted file]
htslib/htslib/faidx.h [deleted file]
htslib/htslib/hfile.h [deleted file]
htslib/htslib/hts.h [deleted file]
htslib/htslib/hts_defs.h [deleted file]
htslib/htslib/kfunc.h [deleted file]
htslib/htslib/khash.h [deleted file]
htslib/htslib/khash_str2int.h [deleted file]
htslib/htslib/klist.h [deleted file]
htslib/htslib/knetfile.h [deleted file]
htslib/htslib/kseq.h [deleted file]
htslib/htslib/ksort.h [deleted file]
htslib/htslib/kstring.h [deleted file]
htslib/htslib/regidx.h [deleted file]
htslib/htslib/sam.h [deleted file]
htslib/htslib/synced_bcf_reader.h [deleted file]
htslib/htslib/tbx.h [deleted file]
htslib/htslib/vcf.h [deleted file]
htslib/htslib/vcf_sweep.h [deleted file]
htslib/htslib/vcfutils.h [deleted file]
htslib/htslib_vars.mk [deleted file]
htslib/kfunc.c [deleted file]
htslib/knetfile.c [deleted file]
htslib/kstring.c [deleted file]
htslib/regidx.c [deleted file]
htslib/sam.5 [deleted file]
htslib/sam.c [deleted file]
htslib/synced_bcf_reader.c [deleted file]
htslib/tabix.1 [deleted file]
htslib/tabix.c [deleted file]
htslib/tbx.c [deleted file]
htslib/test/auxf#values.sam [deleted file]
htslib/test/auxf.fa [deleted file]
htslib/test/auxf.fa.fai [deleted file]
htslib/test/c1#bounds.sam [deleted file]
htslib/test/c1#clip.sam [deleted file]
htslib/test/c1#pad1.sam [deleted file]
htslib/test/c1#pad2.sam [deleted file]
htslib/test/c1#pad3.sam [deleted file]
htslib/test/c1.fa [deleted file]
htslib/test/c1.fa.fai [deleted file]
htslib/test/ce#1.sam [deleted file]
htslib/test/ce#2.sam [deleted file]
htslib/test/ce#5.sam [deleted file]
htslib/test/ce#5b.sam [deleted file]
htslib/test/ce#large_seq.sam [deleted file]
htslib/test/ce#tag_depadded.sam [deleted file]
htslib/test/ce#tag_padded.sam [deleted file]
htslib/test/ce#unmap.sam [deleted file]
htslib/test/ce#unmap1.sam [deleted file]
htslib/test/ce#unmap2.sam [deleted file]
htslib/test/ce.fa [deleted file]
htslib/test/ce.fa.fai [deleted file]
htslib/test/compare_sam.pl [deleted file]
htslib/test/fieldarith.c [deleted file]
htslib/test/fieldarith.sam [deleted file]
htslib/test/hfile.c [deleted file]
htslib/test/sam.c [deleted file]
htslib/test/test-regidx.c [deleted file]
htslib/test/test-vcf-api.c [deleted file]
htslib/test/test-vcf-api.out [deleted file]
htslib/test/test-vcf-sweep.c [deleted file]
htslib/test/test-vcf-sweep.out [deleted file]
htslib/test/test.pl [deleted file]
htslib/test/test_view.c [deleted file]
htslib/test/test_view.pl [deleted file]
htslib/test/xx#blank.sam [deleted file]
htslib/test/xx#large_aux.sam [deleted file]
htslib/test/xx#large_aux2.sam [deleted file]
htslib/test/xx#minimal.sam [deleted file]
htslib/test/xx#pair.sam [deleted file]
htslib/test/xx#rg.sam [deleted file]
htslib/test/xx#triplet.sam [deleted file]
htslib/test/xx#unsorted.sam [deleted file]
htslib/test/xx.fa [deleted file]
htslib/test/xx.fa.fai [deleted file]
htslib/vcf.5 [deleted file]
htslib/vcf.c [deleted file]
htslib/vcf_sweep.c [deleted file]
htslib/vcfutils.c [deleted file]
htslib/version.h [deleted file]