dgit.raspbian.org Git - python-pysam.git/commit

author	Charles Plessy <plessy@debian.org>
	Mon, 14 Feb 2011 09:52:55 +0000 (18:52 +0900)
committer	Charles Plessy <plessy@debian.org>
	Mon, 14 Feb 2011 09:52:55 +0000 (18:52 +0900)
commit	26f0309da73972c169b6e5be6645ba0f1fb072fe
tree	e59642689b53c24e6b64595dca7dd612389e4ba4	tree \| snapshot
parent	a45a2accd0eff4cb17cdf5215b90ee4dbf43eecc	commit \| diff

Imported Upstream version 0.4

119 files changed:

MANIFEST.in		diff \| blob \| history
PKG-INFO		diff \| blob \| history
ez_setup.py	[new file with mode: 0644]	blob
pysam.egg-info/PKG-INFO	[new file with mode: 0644]	blob
pysam.egg-info/SOURCES.txt	[new file with mode: 0644]	blob
pysam.egg-info/dependency_links.txt	[new file with mode: 0644]	blob
pysam.egg-info/requires.txt	[new file with mode: 0644]	blob
pysam.egg-info/top_level.txt	[new file with mode: 0644]	blob
pysam/Pileup.py		diff \| blob \| history
pysam/__init__.py		diff \| blob \| history
pysam/csamtools.c	[new file with mode: 0644]	blob
pysam/csamtools.pxd		diff \| blob \| history
pysam/csamtools.pyx		diff \| blob \| history
pysam/pysam_util.c		diff \| blob \| history
pysam/pysam_util.h		diff \| blob \| history
pysam/tabix_util.c	[new file with mode: 0644]	blob
pysam/version.py		diff \| blob \| history
samtools/bam.c	[deleted file]	blob \| history
samtools/bam.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam.h		diff \| blob \| history
samtools/bam2bcf.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam2bcf.h	[new file with mode: 0644]	blob
samtools/bam2bcf_indel.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_aux.c	[deleted file]	blob \| history
samtools/bam_aux.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_color.c	[deleted file]	blob \| history
samtools/bam_color.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_import.c	[deleted file]	blob \| history
samtools/bam_import.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_index.c	[deleted file]	blob \| history
samtools/bam_index.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_lpileup.c	[deleted file]	blob \| history
samtools/bam_lpileup.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_maqcns.c	[deleted file]	blob \| history
samtools/bam_maqcns.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_maqcns.h		diff \| blob \| history
samtools/bam_mate.c	[deleted file]	blob \| history
samtools/bam_mate.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_md.c	[deleted file]	blob \| history
samtools/bam_md.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_pileup.c	[deleted file]	blob \| history
samtools/bam_pileup.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_plcmd.c	[deleted file]	blob \| history
samtools/bam_plcmd.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_reheader.c	[deleted file]	blob \| history
samtools/bam_rmdup.c	[deleted file]	blob \| history
samtools/bam_rmdup.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_rmdupse.c	[deleted file]	blob \| history
samtools/bam_rmdupse.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_sort.c	[deleted file]	blob \| history
samtools/bam_sort.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_stat.c	[deleted file]	blob \| history
samtools/bam_stat.c.pysam.c	[new file with mode: 0644]	blob
samtools/bam_tview.c	[deleted file]	blob \| history
samtools/bam_tview.c.pysam.c	[new file with mode: 0644]	blob
samtools/bcftools/bcf.c.pysam.c	[new file with mode: 0644]	blob
samtools/bcftools/bcf.h	[new file with mode: 0644]	blob
samtools/bcftools/bcf2qcall.c.pysam.c	[new file with mode: 0644]	blob
samtools/bcftools/bcfutils.c.pysam.c	[new file with mode: 0644]	blob
samtools/bcftools/call1.c.pysam.c	[new file with mode: 0644]	blob
samtools/bcftools/fet.c.pysam.c	[new file with mode: 0644]	blob
samtools/bcftools/index.c.pysam.c	[new file with mode: 0644]	blob
samtools/bcftools/kfunc.c.pysam.c	[new file with mode: 0644]	blob
samtools/bcftools/ld.c.pysam.c	[new file with mode: 0644]	blob
samtools/bcftools/prob1.c.pysam.c	[new file with mode: 0644]	blob
samtools/bcftools/prob1.h	[new file with mode: 0644]	blob
samtools/bcftools/vcf.c.pysam.c	[new file with mode: 0644]	blob
samtools/bgzf.c	[deleted file]	blob \| history
samtools/bgzf.c.pysam.c	[new file with mode: 0644]	blob
samtools/errmod.c.pysam.c	[new file with mode: 0644]	blob
samtools/errmod.h	[new file with mode: 0644]	blob
samtools/faidx.c	[deleted file]	blob \| history
samtools/faidx.c.pysam.c	[new file with mode: 0644]	blob
samtools/glf.c	[deleted file]	blob \| history
samtools/glf.c.pysam.c	[new file with mode: 0644]	blob
samtools/kaln.c	[deleted file]	blob \| history
samtools/kaln.c.pysam.c	[new file with mode: 0644]	blob
samtools/kaln.h		diff \| blob \| history
samtools/knetfile.c	[deleted file]	blob \| history
samtools/knetfile.c.pysam.c	[new file with mode: 0644]	blob
samtools/kprobaln.c.pysam.c	[new file with mode: 0644]	blob
samtools/kprobaln.h	[new file with mode: 0644]	blob
samtools/ksort.h		diff \| blob \| history
samtools/kstring.c	[deleted file]	blob \| history
samtools/kstring.c.pysam.c	[new file with mode: 0644]	blob
samtools/kstring.h		diff \| blob \| history
samtools/pysam.h	[new file with mode: 0644]	blob
samtools/razf.c	[deleted file]	blob \| history
samtools/razf.c.pysam.c	[new file with mode: 0644]	blob
samtools/sam.c	[deleted file]	blob \| history
samtools/sam.c.pysam.c	[new file with mode: 0644]	blob
samtools/sam_header.c	[deleted file]	blob \| history
samtools/sam_header.c.pysam.c	[new file with mode: 0644]	blob
samtools/sam_view.c	[deleted file]	blob \| history
samtools/sam_view.c.pysam.c	[new file with mode: 0644]	blob
samtools/sample.c.pysam.c	[new file with mode: 0644]	blob
samtools/sample.h	[new file with mode: 0644]	blob
samtools/win32/xcurses.h	[new file with mode: 0644]	blob
samtools/win32/zconf.h	[new file with mode: 0644]	blob
samtools/win32/zlib.h	[new file with mode: 0644]	blob
setup.cfg		diff \| blob \| history
setup.py		diff \| blob \| history
tabix/bgzf.c	[deleted file]	blob \| history
tabix/bgzf.c.pysam.c	[new file with mode: 0644]	blob
tabix/bgzf.h		diff \| blob \| history
tabix/bgzip.c	[deleted file]	blob \| history
tabix/bgzip.c.pysam.c	[new file with mode: 0644]	blob
tabix/index.c	[deleted file]	blob \| history
tabix/index.c.pysam.c	[new file with mode: 0644]	blob
tabix/knetfile.c	[deleted file]	blob \| history
tabix/knetfile.c.pysam.c	[new file with mode: 0644]	blob
tabix/kstring.c	[deleted file]	blob \| history
tabix/kstring.c.pysam.c	[new file with mode: 0644]	blob
tabix/pysam.h	[new file with mode: 0644]	blob
tests/Makefile		diff \| blob \| history
tests/ex10.sam	[new file with mode: 0644]	blob
tests/ex9_fail.bam	[new file with mode: 0644]	blob
tests/ex9_nofail.bam	[new file with mode: 0644]	blob
tests/pysam_test.py		diff \| blob \| history

Unnamed repository; edit this file 'description' to name the repository.

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