dgit.raspbian.org Git - python-pysam.git/commit

author	Andreas Tille <tille@debian.org>
	Tue, 29 Aug 2017 20:51:34 +0000 (22:51 +0200)
committer	Andreas Tille <tille@debian.org>
	Tue, 29 Aug 2017 20:51:34 +0000 (22:51 +0200)
commit	05f585113cc1da1e886586274e61c78a6464068a
tree	534de87ec93c80654b2694a3eb63a3a577c896b3	tree \| snapshot
parent	1520aab08562a7f44fd4570ea351a3dbd5db5a35	commit \| diff

New upstream version 0.12.0+ds

92 files changed:

.gitignore		diff \| blob \| history
README.rst		diff \| blob \| history
bcftools/HMM.c		diff \| blob \| history
bcftools/HMM.c.pysam.c		diff \| blob \| history
bcftools/HMM.h		diff \| blob \| history
bcftools/bam2bcf.c		diff \| blob \| history
bcftools/bam2bcf.c.pysam.c		diff \| blob \| history
bcftools/bam2bcf_indel.c		diff \| blob \| history
bcftools/bam2bcf_indel.c.pysam.c		diff \| blob \| history
bcftools/bcftools.h		diff \| blob \| history
bcftools/consensus.c		diff \| blob \| history
bcftools/consensus.c.pysam.c		diff \| blob \| history
bcftools/filter.c		diff \| blob \| history
bcftools/filter.c.pysam.c		diff \| blob \| history
bcftools/main.c		diff \| blob \| history
bcftools/main.c.pysam.c		diff \| blob \| history
bcftools/rbuf.h		diff \| blob \| history
bcftools/vcfbuf.c	[new file with mode: 0644]	blob
bcftools/vcfbuf.c.pysam.c	[new file with mode: 0644]	blob
bcftools/vcfbuf.h	[new file with mode: 0644]	blob
bcftools/vcfconvert.c		diff \| blob \| history
bcftools/vcfconvert.c.pysam.c		diff \| blob \| history
bcftools/vcfmerge.c		diff \| blob \| history
bcftools/vcfmerge.c.pysam.c		diff \| blob \| history
bcftools/vcfnorm.c		diff \| blob \| history
bcftools/vcfnorm.c.pysam.c		diff \| blob \| history
bcftools/vcfplugin.c		diff \| blob \| history
bcftools/vcfplugin.c.pysam.c		diff \| blob \| history
bcftools/vcfroh.c		diff \| blob \| history
bcftools/vcfroh.c.pysam.c		diff \| blob \| history
bcftools/version.h		diff \| blob \| history
cy_build.py		diff \| blob \| history
doc/conf.py		diff \| blob \| history
doc/faq.rst		diff \| blob \| history
doc/glossary.rst		diff \| blob \| history
doc/installation.rst		diff \| blob \| history
doc/release.rst		diff \| blob \| history
import.py		diff \| blob \| history
linker_tests/link_pre_489/PysamTestModule_link_pre_489/BuildRead.pyx	[new file with mode: 0644]	blob
linker_tests/link_pre_489/PysamTestModule_link_pre_489/__init__.py	[new file with mode: 0644]	blob
linker_tests/link_pre_489/cy_build.py	[new file with mode: 0644]	blob
linker_tests/link_pre_489/setup.py	[new file with mode: 0644]	blob
linker_tests/link_pre_489/tests/test_module.py	[new file with mode: 0644]	blob
linker_tests/link_with_rpath/PysamTestModule_link_with_rpath/BuildRead.pyx	[new file with mode: 0644]	blob
linker_tests/link_with_rpath/PysamTestModule_link_with_rpath/__init__.py	[new file with mode: 0644]	blob
linker_tests/link_with_rpath/setup.py	[new file with mode: 0644]	blob
linker_tests/link_with_rpath/tests/test_module.py	[new file with mode: 0644]	blob
linker_tests/link_without_rpath/PysamTestModule_link_without_rpath/BuildRead.pyx	[new file with mode: 0644]	blob
linker_tests/link_without_rpath/PysamTestModule_link_without_rpath/__init__.py	[new file with mode: 0644]	blob
linker_tests/link_without_rpath/setup.py	[new file with mode: 0644]	blob
linker_tests/link_without_rpath/tests/test_module.py	[new file with mode: 0644]	blob
pysam/htslib_util.c		diff \| blob \| history
pysam/htslib_util.h		diff \| blob \| history
pysam/libcalignedsegment.pxd		diff \| blob \| history
pysam/libcalignedsegment.pyx		diff \| blob \| history
pysam/libcalignmentfile.pxd		diff \| blob \| history
pysam/libcalignmentfile.pyx		diff \| blob \| history
pysam/libcbcf.pyx		diff \| blob \| history
pysam/libcbgzf.pyx		diff \| blob \| history
pysam/libcfaidx.pxd		diff \| blob \| history
pysam/libcfaidx.pyx		diff \| blob \| history
pysam/libchtslib.pxd		diff \| blob \| history
pysam/libchtslib.pyx		diff \| blob \| history
pysam/libctabix.pyx		diff \| blob \| history
pysam/libctabixproxies.pyx		diff \| blob \| history
pysam/libcutils.pyx		diff \| blob \| history
pysam/version.py		diff \| blob \| history
run_tests_travis.sh		diff \| blob \| history
samtools/bam.h		diff \| blob \| history
samtools/bam_reheader.c.pysam.c		diff \| blob \| history
samtools/bam_sort.c		diff \| blob \| history
samtools/bam_sort.c.pysam.c		diff \| blob \| history
samtools/bam_stat.c.pysam.c		diff \| blob \| history
samtools/bamtk.c.pysam.c		diff \| blob \| history
samtools/sam_view.c		diff \| blob \| history
samtools/sam_view.c.pysam.c		diff \| blob \| history
samtools/stats.c.pysam.c		diff \| blob \| history
samtools/version.h		diff \| blob \| history
setup.cfg	[new file with mode: 0644]	blob
tests/AlignedSegment_test.py		diff \| blob \| history
tests/AlignmentFile_test.py		diff \| blob \| history
tests/StreamFiledescriptors_test.py		diff \| blob \| history
tests/TestUtils.py		diff \| blob \| history
tests/VariantFile_test.py		diff \| blob \| history
tests/compile_test.py		diff \| blob \| history
tests/faidx_test.py		diff \| blob \| history
tests/linking_test.py	[new file with mode: 0644]	blob
tests/pysam_data/test_mapped_unmapped.sam		diff \| blob \| history
tests/samtools_test.py		diff \| blob \| history
tests/tabix_test.py		diff \| blob \| history
tests/tabixproxies_test.py		diff \| blob \| history
tests/test_samtools_python.py		diff \| blob \| history

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