Imported Upstream version 2.2.31
authorAndreas Tille <tille@debian.org>
Tue, 12 Apr 2016 10:45:33 +0000 (12:45 +0200)
committerAndreas Tille <tille@debian.org>
Tue, 12 Apr 2016 10:45:33 +0000 (12:45 +0200)
commit03c4257c90dabff2b5ffe63c03acfee26e2eebc5
treef351fb9c741dfa347f64471fd85dbbc3dff25317
parentc085268c1528238f475c86e33e5566e3c50b5d46
Imported Upstream version 2.2.31
4826 files changed:
c++/compilers/cygwin/build.sh [new file with mode: 0644]
c++/compilers/cygwin/check.sh [new file with mode: 0644]
c++/compilers/msvc1000_prj/Makefile.WinMain.app.msvc [new file with mode: 0644]
c++/compilers/msvc1000_prj/Makefile.wxWidgets.app.msvc [new file with mode: 0644]
c++/compilers/msvc1000_prj/build.sh [new file with mode: 0644]
c++/compilers/msvc1000_prj/build_exec.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/build_util.sh [new file with mode: 0644]
c++/compilers/msvc1000_prj/check.sh [new file with mode: 0644]
c++/compilers/msvc1000_prj/configure.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/datatool.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/all.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/all_gbench.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/all_gui.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/all_ncbi.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gbench/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gbench/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gbench/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gbench/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gbench/configure_prebuild.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gbench/gbench_install/gbench-install.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gbench/ncbi_gbench.sln [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gui/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gui/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gui/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/gui/ncbi_gui_dll.sln [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/internal/gbench/gbench_install_internal/gbench-install-internal.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/build/ncbi_cpp_dll.sln [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/dll_main.cpp [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/third_party_dll_install.mak [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/third_party_dll_install.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/dll/third_party_msvcdll_install.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/install.sh [new file with mode: 0644]
c++/compilers/msvc1000_prj/lock_ptb_config.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/make.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/make_ncbi.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/msvcvars.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/ncbi.rc [new file with mode: 0644]
c++/compilers/msvc1000_prj/ncbilogo.ico [new file with mode: 0644]
c++/compilers/msvc1000_prj/ptb.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/UtilityProjects/PTB.sln [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/all.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/all_gui.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/all_ncbi.bat [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/build-system/project_tree_builder/msbuild/msbuild_dataobj.lib.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/build-system/project_tree_builder/project_tree_builder.exe.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/corelib/xncbi.lib.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/gui/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/gui/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/gui/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/gui/ncbi_gui.sln [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/ncbi_cpp.sln [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/serial/datatool/datatool.exe.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/serial/xser.lib.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/util/regexp/regexp.lib.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/util/xregexp/xregexp.lib.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/build/util/xutil.lib.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/third_party_msvcstatic_install.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/third_party_static_install.mak [new file with mode: 0644]
c++/compilers/msvc1000_prj/static/third_party_static_install.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/third_party_install.meta.mk [new file with mode: 0644]
c++/compilers/msvc1000_prj/user/build/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/user/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/msvc1000_prj/user/build/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/user/build/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc1000_prj/user/build/ncbi_user.sln [new file with mode: 0644]
c++/compilers/msvc900_prj/Makefile.WinMain.app.msvc [new file with mode: 0644]
c++/compilers/msvc900_prj/Makefile.wxWidgets.app.msvc [new file with mode: 0644]
c++/compilers/msvc900_prj/build.sh [new file with mode: 0644]
c++/compilers/msvc900_prj/build_exec.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/check.sh [new file with mode: 0644]
c++/compilers/msvc900_prj/configure.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/datatool.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/UtilityProjects/_CONFIGURE_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/UtilityProjects/_CONFIGURE_DIALOG_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/all.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/all_gbench.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/all_gui.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/all_ncbi.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/gbench/UtilityProjects/_CONFIGURE_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/gbench/UtilityProjects/_CONFIGURE_DIALOG_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/gbench/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/gbench/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/gbench/gbench_install/gbench-install.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/gbench/ncbi_gbench.sln [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/gui/UtilityProjects/_CONFIGURE_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/gui/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/gui/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/gui/ncbi_gui_dll.sln [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/internal/gbench/gbench_install_internal/gbench-install-internal.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/ncbi_cpp_dll.sln [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/wrappers/UtilityProjects/_CONFIGURE_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/wrappers/UtilityProjects/_CONFIGURE_DIALOG_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/wrappers/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/wrappers/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/build/wrappers/wrappers.sln [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/dll_main.cpp [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/third_party_dll_install.mak [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/third_party_dll_install.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/dll/third_party_msvcdll_install.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/install.sh [new file with mode: 0644]
c++/compilers/msvc900_prj/lock_ptb_config.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/make.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/make_ncbi.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/msvcvars.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/ncbi.rc [new file with mode: 0644]
c++/compilers/msvc900_prj/ncbilogo.ico [new file with mode: 0644]
c++/compilers/msvc900_prj/ptb.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/UtilityProjects/PTB.sln [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/UtilityProjects/_CONFIGURE_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/UtilityProjects/_CONFIGURE_DIALOG_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/all.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/all_gui.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/all_ncbi.bat [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/build-system/project_tree_builder/msbuild/msbuild_dataobj.lib.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/build-system/project_tree_builder/project_tree_builder.exe.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/corelib/xncbi.lib.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/gui/UtilityProjects/_CONFIGURE_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/gui/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/gui/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/gui/ncbi_gui.sln [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/ncbi_cpp.sln [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/serial/datatool/datatool.exe.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/serial/xser.lib.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/util/regexp/regexp.lib.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/util/xregexp/xregexp.lib.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/build/util/xutil.lib.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/third_party_msvcstatic_install.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/static/third_party_static_install.mak [new file with mode: 0644]
c++/compilers/msvc900_prj/static/third_party_static_install.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/third_party_install.meta.mk [new file with mode: 0644]
c++/compilers/msvc900_prj/user/build/UtilityProjects/_CONFIGURE_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/user/build/UtilityProjects/_CONFIGURE_DIALOG_.vcproj [new file with mode: 0644]
c++/compilers/msvc900_prj/user/build/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/msvc900_prj/user/build/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/msvc900_prj/user/build/ncbi_user.sln [new file with mode: 0644]
c++/compilers/unix/Clang.sh [new file with mode: 0755]
c++/compilers/unix/GCC.sh [new file with mode: 0755]
c++/compilers/unix/ICC.sh [new file with mode: 0755]
c++/compilers/unix/LLVM-GCC.sh [new file with mode: 0755]
c++/compilers/unix/WorkShop.sh [new file with mode: 0755]
c++/compilers/unix/WorkShop510.sh [new file with mode: 0755]
c++/compilers/unix/WorkShop511.sh [new file with mode: 0755]
c++/compilers/unix/WorkShop59.sh [new file with mode: 0755]
c++/compilers/unix/Xcode.sh [new file with mode: 0755]
c++/compilers/unix/cxx_filter.ICC.sh [new file with mode: 0755]
c++/compilers/unix/cxx_filter.WorkShop.awk [new file with mode: 0644]
c++/compilers/unix/cxx_filter.WorkShop.sh [new file with mode: 0755]
c++/compilers/unix/cxx_filter.WorkShop59.sh [new file with mode: 0755]
c++/compilers/unix/psrc [new file with mode: 0644]
c++/compilers/vs2012/Makefile.WinMain.app.msvc [new file with mode: 0644]
c++/compilers/vs2012/Makefile.wxWidgets.app.msvc [new file with mode: 0644]
c++/compilers/vs2012/build.sh [new file with mode: 0644]
c++/compilers/vs2012/build_exec.bat [new file with mode: 0644]
c++/compilers/vs2012/build_util.sh [new file with mode: 0644]
c++/compilers/vs2012/check.sh [new file with mode: 0644]
c++/compilers/vs2012/configure.bat [new file with mode: 0644]
c++/compilers/vs2012/datatool.bat [new file with mode: 0644]
c++/compilers/vs2012/dll/build/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/dll/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/dll/build/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/vs2012/dll/build/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/vs2012/dll/build/all.bat [new file with mode: 0644]
c++/compilers/vs2012/dll/build/all_gbench.bat [new file with mode: 0644]
c++/compilers/vs2012/dll/build/all_gui.bat [new file with mode: 0644]
c++/compilers/vs2012/dll/build/all_ncbi.bat [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gbench/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gbench/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gbench/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gbench/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gbench/configure_prebuild.bat [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gbench/gbench_install/gbench-install.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gbench/ncbi_gbench.sln [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gui/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gui/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gui/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/vs2012/dll/build/gui/ncbi_gui_dll.sln [new file with mode: 0644]
c++/compilers/vs2012/dll/build/internal/gbench/gbench_install_internal/gbench-install-internal.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/dll/build/ncbi_cpp_dll.sln [new file with mode: 0644]
c++/compilers/vs2012/dll/dll_main.cpp [new file with mode: 0644]
c++/compilers/vs2012/dll/third_party_dll_install.mak [new file with mode: 0644]
c++/compilers/vs2012/dll/third_party_dll_install.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/dll/third_party_msvcdll_install.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/install.sh [new file with mode: 0644]
c++/compilers/vs2012/lock_ptb_config.bat [new file with mode: 0644]
c++/compilers/vs2012/make.bat [new file with mode: 0644]
c++/compilers/vs2012/make_ncbi.bat [new file with mode: 0644]
c++/compilers/vs2012/msvcvars.bat [new file with mode: 0644]
c++/compilers/vs2012/ncbi.rc [new file with mode: 0644]
c++/compilers/vs2012/ncbilogo.ico [new file with mode: 0644]
c++/compilers/vs2012/ptb.bat [new file with mode: 0644]
c++/compilers/vs2012/static/build/UtilityProjects/PTB.sln [new file with mode: 0644]
c++/compilers/vs2012/static/build/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/static/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/static/build/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/vs2012/static/build/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/vs2012/static/build/all.bat [new file with mode: 0644]
c++/compilers/vs2012/static/build/all_gui.bat [new file with mode: 0644]
c++/compilers/vs2012/static/build/all_ncbi.bat [new file with mode: 0644]
c++/compilers/vs2012/static/build/build-system/project_tree_builder/msbuild/msbuild_dataobj.lib.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/static/build/build-system/project_tree_builder/project_tree_builder.exe.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/static/build/corelib/xncbi.lib.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/static/build/gui/UtilityProjects/_CONFIGURE_.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/static/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/static/build/gui/UtilityProjects/configure._ [new file with mode: 0644]
c++/compilers/vs2012/static/build/gui/UtilityProjects/configure_dialog._ [new file with mode: 0644]
c++/compilers/vs2012/static/build/gui/ncbi_gui.sln [new file with mode: 0644]
c++/compilers/vs2012/static/build/ncbi_cpp.sln [new file with mode: 0644]
c++/compilers/vs2012/static/build/serial/datatool/datatool.exe.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/static/build/serial/xser.lib.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/static/build/util/regexp/regexp.lib.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/static/build/util/xregexp/xregexp.lib.vcxproj [new file with mode: 0644]
c++/compilers/vs2012/static/build/util/xutil.lib.vcxproj [new file with mode: 0644]
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c++/include/algo/blast/core/pattern.h [new file with mode: 0644]
c++/include/algo/blast/core/phi_extend.h [new file with mode: 0644]
c++/include/algo/blast/core/phi_gapalign.h [new file with mode: 0644]
c++/include/algo/blast/core/phi_lookup.h [new file with mode: 0644]
c++/include/algo/blast/core/split_query.h [new file with mode: 0644]
c++/include/algo/blast/dbindex/dbindex.hpp [new file with mode: 0644]
c++/include/algo/blast/dbindex/dbindex_sp.hpp [new file with mode: 0644]
c++/include/algo/blast/dbindex/sequence_istream.hpp [new file with mode: 0644]
c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp [new file with mode: 0644]
c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp [new file with mode: 0644]
c++/include/algo/blast/format/blast_format.hpp [new file with mode: 0644]
c++/include/algo/blast/format/blastfmtutil.hpp [new file with mode: 0644]
c++/include/algo/blast/format/blastxml2_format.hpp [new file with mode: 0644]
c++/include/algo/blast/format/blastxml_format.hpp [new file with mode: 0644]
c++/include/algo/blast/format/build_archive.hpp [new file with mode: 0644]
c++/include/algo/blast/format/data4xml2format.hpp [new file with mode: 0644]
c++/include/algo/blast/format/data4xmlformat.hpp [new file with mode: 0644]
c++/include/algo/blast/format/vecscreen_run.hpp [new file with mode: 0644]
c++/include/algo/blast/igblast/igblast.hpp [new file with mode: 0644]
c++/include/algo/dustmask/sdust.tex [new file with mode: 0755]
c++/include/algo/dustmask/symdust.hpp [new file with mode: 0644]
c++/include/algo/segmask/segmask.hpp [new file with mode: 0644]
c++/include/algo/winmask/README.API [new file with mode: 0644]
c++/include/algo/winmask/seq_masker.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_cache_boost.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_istat.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_istat_ascii.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_istat_bin.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_istat_factory.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_istat_oascii.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_istat_obinary.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_ostat.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_ostat_ascii.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_ostat_bin.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_ostat_factory.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_ostat_opt.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_score.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_score_mean.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_score_mean_glob.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_score_min.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_uset_array.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_uset_hash.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_uset_simple.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_util.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_window.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_window_ambig.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_window_pattern.hpp [new file with mode: 0644]
c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp [new file with mode: 0644]
c++/include/algo/winmask/win_mask_config.hpp [new file with mode: 0644]
c++/include/algo/winmask/win_mask_counts_converter.hpp [new file with mode: 0644]
c++/include/algo/winmask/win_mask_dup_table.hpp [new file with mode: 0644]
c++/include/algo/winmask/win_mask_gen_counts.hpp [new file with mode: 0644]
c++/include/algo/winmask/win_mask_util.hpp [new file with mode: 0644]
c++/include/cgi/caf.hpp [new file with mode: 0644]
c++/include/cgi/cgi_exception.hpp [new file with mode: 0644]
c++/include/cgi/cgi_serial.hpp [new file with mode: 0644]
c++/include/cgi/cgi_session.hpp [new file with mode: 0644]
c++/include/cgi/cgi_util.hpp [new file with mode: 0644]
c++/include/cgi/cgiapp.hpp [new file with mode: 0644]
c++/include/cgi/cgiapp_cached.hpp [new file with mode: 0644]
c++/include/cgi/cgictx.hpp [new file with mode: 0644]
c++/include/cgi/error_codes.hpp [new file with mode: 0644]
c++/include/cgi/impl/cgi_entry_reader.hpp [new file with mode: 0644]
c++/include/cgi/ncbicgi.hpp [new file with mode: 0644]
c++/include/cgi/ncbicgir.hpp [new file with mode: 0644]
c++/include/cgi/ncbires.hpp [new file with mode: 0644]
c++/include/cgi/ref_args.hpp [new file with mode: 0644]
c++/include/cgi/user_agent.hpp [new file with mode: 0644]
c++/include/common/config/ncbiconf_msvc.h [new file with mode: 0644]
c++/include/common/config/ncbiconf_msvc_site.h [new file with mode: 0644]
c++/include/common/config/ncbiconf_universal.h [new file with mode: 0644]
c++/include/common/config/ncbiconf_xcode.h [new file with mode: 0644]
c++/include/common/config/ncbiconf_xcode_site.h [new file with mode: 0644]
c++/include/common/header_template.hpp [new file with mode: 0644]
c++/include/common/metamodules_doxygen.h [new file with mode: 0644]
c++/include/common/ncbi_export.h [new file with mode: 0644]
c++/include/common/ncbi_package_ver.h [new file with mode: 0644]
c++/include/common/ncbi_pch_impl.hpp [new file with mode: 0644]
c++/include/common/ncbi_skew_guard.h [new file with mode: 0644]
c++/include/common/ncbi_source_ver.h [new file with mode: 0644]
c++/include/common/ncbiconf_impl.h [new file with mode: 0644]
c++/include/common/test_assert.h [new file with mode: 0644]
c++/include/common/test_assert_impl.h [new file with mode: 0644]
c++/include/common/test_data_path.h [new file with mode: 0644]
c++/include/connect/connect_export.h [new file with mode: 0644]
c++/include/connect/email_diag_handler.hpp [new file with mode: 0644]
c++/include/connect/error_codes.hpp [new file with mode: 0644]
c++/include/connect/impl/server_connection.hpp [new file with mode: 0644]
c++/include/connect/impl/thread_pool_for_server.hpp [new file with mode: 0644]
c++/include/connect/ncbi_base64.h [new file with mode: 0644]
c++/include/connect/ncbi_buffer.h [new file with mode: 0644]
c++/include/connect/ncbi_conn_exception.hpp [new file with mode: 0644]
c++/include/connect/ncbi_conn_reader_writer.hpp [new file with mode: 0644]
c++/include/connect/ncbi_conn_stream.hpp [new file with mode: 0644]
c++/include/connect/ncbi_conn_test.hpp [new file with mode: 0644]
c++/include/connect/ncbi_connection.h [new file with mode: 0644]
c++/include/connect/ncbi_connector.h [new file with mode: 0644]
c++/include/connect/ncbi_connutil.h [new file with mode: 0644]
c++/include/connect/ncbi_core.h [new file with mode: 0644]
c++/include/connect/ncbi_core_cxx.hpp [new file with mode: 0644]
c++/include/connect/ncbi_file_connector.h [new file with mode: 0644]
c++/include/connect/ncbi_ftp_connector.h [new file with mode: 0644]
c++/include/connect/ncbi_gnutls.h [new file with mode: 0644]
c++/include/connect/ncbi_heapmgr.h [new file with mode: 0644]
c++/include/connect/ncbi_host_info.h [new file with mode: 0644]
c++/include/connect/ncbi_http_connector.h [new file with mode: 0644]
c++/include/connect/ncbi_http_session.hpp [new file with mode: 0644]
c++/include/connect/ncbi_memory_connector.h [new file with mode: 0644]
c++/include/connect/ncbi_misc.hpp [new file with mode: 0644]
c++/include/connect/ncbi_namedpipe.hpp [new file with mode: 0644]
c++/include/connect/ncbi_namedpipe_connector.hpp [new file with mode: 0644]
c++/include/connect/ncbi_pipe.hpp [new file with mode: 0644]
c++/include/connect/ncbi_pipe_connector.hpp [new file with mode: 0644]
c++/include/connect/ncbi_sendmail.h [new file with mode: 0644]
c++/include/connect/ncbi_server_info.h [new file with mode: 0644]
c++/include/connect/ncbi_service.h [new file with mode: 0644]
c++/include/connect/ncbi_service_connector.h [new file with mode: 0644]
c++/include/connect/ncbi_socket.h [new file with mode: 0644]
c++/include/connect/ncbi_socket.hpp [new file with mode: 0644]
c++/include/connect/ncbi_socket_connector.h [new file with mode: 0644]
c++/include/connect/ncbi_socket_unix.h [new file with mode: 0644]
c++/include/connect/ncbi_socket_unix.hpp [new file with mode: 0644]
c++/include/connect/ncbi_types.h [new file with mode: 0644]
c++/include/connect/ncbi_userhost.hpp [new file with mode: 0644]
c++/include/connect/ncbi_util.h [new file with mode: 0644]
c++/include/connect/server.hpp [new file with mode: 0644]
c++/include/connect/server_monitor.hpp [new file with mode: 0644]
c++/include/connect/services/blob_storage_netcache.hpp [new file with mode: 0644]
c++/include/connect/services/clparser.hpp [new file with mode: 0644]
c++/include/connect/services/compound_id.hpp [new file with mode: 0644]
c++/include/connect/services/error_codes.hpp [new file with mode: 0644]
c++/include/connect/services/grid_app_version_info.hpp [new file with mode: 0644]
c++/include/connect/services/grid_client.hpp [new file with mode: 0644]
c++/include/connect/services/grid_client_app.hpp [new file with mode: 0644]
c++/include/connect/services/grid_globals.hpp [new file with mode: 0644]
c++/include/connect/services/grid_rw_impl.hpp [new file with mode: 0644]
c++/include/connect/services/grid_worker.hpp [new file with mode: 0644]
c++/include/connect/services/grid_worker_app.hpp [new file with mode: 0644]
c++/include/connect/services/json_over_uttp.hpp [new file with mode: 0644]
c++/include/connect/services/named_parameters.hpp [new file with mode: 0644]
c++/include/connect/services/netcache_admin.hpp [new file with mode: 0644]
c++/include/connect/services/netcache_api.hpp [new file with mode: 0644]
c++/include/connect/services/netcache_api_expt.hpp [new file with mode: 0644]
c++/include/connect/services/netcache_key.hpp [new file with mode: 0644]
c++/include/connect/services/netcomponent.hpp [new file with mode: 0644]
c++/include/connect/services/neticache_client.hpp [new file with mode: 0644]
c++/include/connect/services/netschedule_api.hpp [new file with mode: 0644]
c++/include/connect/services/netschedule_api_expt.hpp [new file with mode: 0644]
c++/include/connect/services/netschedule_key.hpp [new file with mode: 0644]
c++/include/connect/services/netservice_api.hpp [new file with mode: 0644]
c++/include/connect/services/netservice_api_expt.hpp [new file with mode: 0644]
c++/include/connect/services/netservice_protocol_parser.hpp [new file with mode: 0644]
c++/include/connect/services/netstorage.hpp [new file with mode: 0644]
c++/include/connect/services/netstorage_admin.hpp [new file with mode: 0644]
c++/include/connect/services/netstorage_impl.hpp [new file with mode: 0644]
c++/include/connect/services/ns_client_factory.hpp [new file with mode: 0644]
c++/include/connect/services/ns_job_serializer.hpp [new file with mode: 0644]
c++/include/connect/services/ns_output_parser.hpp [new file with mode: 0644]
c++/include/connect/services/remote_app.hpp [new file with mode: 0644]
c++/include/connect/services/srv_connections.hpp [new file with mode: 0644]
c++/include/connect/services/srv_connections_expt.hpp [new file with mode: 0644]
c++/include/connect/services/util.hpp [new file with mode: 0644]
c++/include/connect/threaded_server.hpp [new file with mode: 0644]
c++/include/corelib/blob_storage.hpp [new file with mode: 0644]
c++/include/corelib/ddumpable.hpp [new file with mode: 0644]
c++/include/corelib/env_reg.hpp [new file with mode: 0644]
c++/include/corelib/error_codes.hpp [new file with mode: 0644]
c++/include/corelib/expr.hpp [new file with mode: 0644]
c++/include/corelib/guard.hpp [new file with mode: 0644]
c++/include/corelib/hash_impl/_hash_fun.h [new file with mode: 0644]
c++/include/corelib/hash_impl/_hash_map.h [new file with mode: 0644]
c++/include/corelib/hash_impl/_hash_set.h [new file with mode: 0644]
c++/include/corelib/hash_impl/_hashtable.c [new file with mode: 0644]
c++/include/corelib/hash_impl/_hashtable.h [new file with mode: 0644]
c++/include/corelib/hash_impl/_relops_hash_cont.h [new file with mode: 0644]
c++/include/corelib/hash_impl/stlp_defs.hpp [new file with mode: 0644]
c++/include/corelib/hash_map.hpp [new file with mode: 0644]
c++/include/corelib/hash_set.hpp [new file with mode: 0644]
c++/include/corelib/impl/ncbi_atomic_defs.h [new file with mode: 0644]
c++/include/corelib/impl/ncbi_dbsvcmapper.hpp [new file with mode: 0644]
c++/include/corelib/impl/ncbi_java.h [new file with mode: 0644]
c++/include/corelib/impl/ncbi_os_mswin.h [new file with mode: 0644]
c++/include/corelib/impl/ncbi_panfs.h [new file with mode: 0644]
c++/include/corelib/impl/ncbi_param_impl.hpp [new file with mode: 0644]
c++/include/corelib/impl/ncbi_toolkit_impl.hpp [new file with mode: 0644]
c++/include/corelib/impl/ncbierror_impl.hpp [new file with mode: 0644]
c++/include/corelib/impl/rwstreambuf.hpp [new file with mode: 0644]
c++/include/corelib/impl/stringutf8_deprecated.hpp [new file with mode: 0644]
c++/include/corelib/impl/stringutf8_deprecated.inl [new file with mode: 0644]
c++/include/corelib/interprocess_lock.hpp [new file with mode: 0644]
c++/include/corelib/metareg.hpp [new file with mode: 0644]
c++/include/corelib/mswin_export.h [new file with mode: 0644]
c++/include/corelib/mswin_no_popup.h [new file with mode: 0644]
c++/include/corelib/ncbi_autoinit.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_base64.h [new file with mode: 0644]
c++/include/corelib/ncbi_bswap.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_config.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_cookies.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_limits.h [new file with mode: 0644]
c++/include/corelib/ncbi_limits.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_mask.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_os_mswin.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_os_unix.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_param.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_process.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_safe_static.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_signal.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_stack.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_strings.h [new file with mode: 0644]
c++/include/corelib/ncbi_system.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_toolkit.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_tree.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_url.hpp [new file with mode: 0644]
c++/include/corelib/ncbi_xstr.hpp [new file with mode: 0644]
c++/include/corelib/ncbiapp.hpp [new file with mode: 0644]
c++/include/corelib/ncbiargs.hpp [new file with mode: 0644]
c++/include/corelib/ncbiatomic.h [new file with mode: 0644]
c++/include/corelib/ncbiatomic.hpp [new file with mode: 0644]
c++/include/corelib/ncbicfg.h [new file with mode: 0644]
c++/include/corelib/ncbicntr.hpp [new file with mode: 0644]
c++/include/corelib/ncbidbg.hpp [new file with mode: 0644]
c++/include/corelib/ncbidiag.hpp [new file with mode: 0644]
c++/include/corelib/ncbidiag.inl [new file with mode: 0644]
c++/include/corelib/ncbidll.hpp [new file with mode: 0644]
c++/include/corelib/ncbienv.hpp [new file with mode: 0644]
c++/include/corelib/ncbierror.hpp [new file with mode: 0644]
c++/include/corelib/ncbiexec.hpp [new file with mode: 0644]
c++/include/corelib/ncbiexpt.hpp [new file with mode: 0644]
c++/include/corelib/ncbifile.hpp [new file with mode: 0644]
c++/include/corelib/ncbifloat.h [new file with mode: 0644]
c++/include/corelib/ncbimempool.hpp [new file with mode: 0644]
c++/include/corelib/ncbimisc.hpp [new file with mode: 0644]
c++/include/corelib/ncbimtx.hpp [new file with mode: 0644]
c++/include/corelib/ncbimtx.inl [new file with mode: 0644]
c++/include/corelib/ncbiobj.hpp [new file with mode: 0644]
c++/include/corelib/ncbireg.hpp [new file with mode: 0644]
c++/include/corelib/ncbistd.hpp [new file with mode: 0644]
c++/include/corelib/ncbistl.hpp [new file with mode: 0644]
c++/include/corelib/ncbistr.hpp [new file with mode: 0644]
c++/include/corelib/ncbistr_util.hpp [new file with mode: 0644]
c++/include/corelib/ncbistre.hpp [new file with mode: 0644]
c++/include/corelib/ncbithr.hpp [new file with mode: 0644]
c++/include/corelib/ncbithr_conf.hpp [new file with mode: 0644]
c++/include/corelib/ncbitime.hpp [new file with mode: 0644]
c++/include/corelib/ncbitype.h [new file with mode: 0644]
c++/include/corelib/ncbiutil.hpp [new file with mode: 0644]
c++/include/corelib/obj_pool.hpp [new file with mode: 0644]
c++/include/corelib/obj_store.hpp [new file with mode: 0644]
c++/include/corelib/perf_log.hpp [new file with mode: 0644]
c++/include/corelib/plugin_manager.hpp [new file with mode: 0644]
c++/include/corelib/plugin_manager_impl.hpp [new file with mode: 0644]
c++/include/corelib/plugin_manager_store.hpp [new file with mode: 0644]
c++/include/corelib/reader_writer.hpp [new file with mode: 0644]
c++/include/corelib/request_control.hpp [new file with mode: 0644]
c++/include/corelib/request_ctx.hpp [new file with mode: 0644]
c++/include/corelib/request_status.hpp [new file with mode: 0644]
c++/include/corelib/resource_info.hpp [new file with mode: 0644]
c++/include/corelib/rwstream.hpp [new file with mode: 0644]
c++/include/corelib/stream_utils.hpp [new file with mode: 0644]
c++/include/corelib/syslog.hpp [new file with mode: 0644]
c++/include/corelib/tempstr.hpp [new file with mode: 0644]
c++/include/corelib/test_boost.hpp [new file with mode: 0644]
c++/include/corelib/test_mt.hpp [new file with mode: 0644]
c++/include/corelib/version.hpp [new file with mode: 0644]
c++/include/dbapi/cache/dbapi_blob_cache.hpp [new file with mode: 0644]
c++/include/dbapi/dbapi.hpp [new file with mode: 0644]
c++/include/dbapi/dbapi_variant_convert.hpp [new file with mode: 0644]
c++/include/dbapi/driver/dbapi_conn_factory.hpp [new file with mode: 0644]
c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp [new file with mode: 0644]
c++/include/dbapi/driver/dbapi_driver_conn_params.hpp [new file with mode: 0644]
c++/include/dbapi/driver/dbapi_driver_convert.hpp [new file with mode: 0644]
c++/include/dbapi/driver/dbapi_object_convert.hpp [new file with mode: 0644]
c++/include/dbapi/driver/dbapi_svc_mapper.hpp [new file with mode: 0644]
c++/include/dbapi/driver/driver_mgr.hpp [new file with mode: 0644]
c++/include/dbapi/driver/drivers.hpp [new file with mode: 0644]
c++/include/dbapi/driver/exception.hpp [new file with mode: 0644]
c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp [new file with mode: 0644]
c++/include/dbapi/driver/impl/dbapi_impl_cmd.hpp [new file with mode: 0644]
c++/include/dbapi/driver/impl/dbapi_impl_connection.hpp [new file with mode: 0644]
c++/include/dbapi/driver/impl/dbapi_impl_context.hpp [new file with mode: 0644]
c++/include/dbapi/driver/impl/dbapi_impl_result.hpp [new file with mode: 0644]
c++/include/dbapi/driver/impl/handle_stack.hpp [new file with mode: 0644]
c++/include/dbapi/driver/interfaces.hpp [new file with mode: 0644]
c++/include/dbapi/driver/odbc/interfaces.hpp [new file with mode: 0644]
c++/include/dbapi/driver/odbc/unix_odbc/odbcinst.h [new file with mode: 0644]
c++/include/dbapi/driver/odbc/unix_odbc/sql.h [new file with mode: 0644]
c++/include/dbapi/driver/odbc/unix_odbc/sqlext.h [new file with mode: 0644]
c++/include/dbapi/driver/odbc/unix_odbc/sqlfront.h [new file with mode: 0644]
c++/include/dbapi/driver/odbc/unix_odbc/sqltypes.h [new file with mode: 0644]
c++/include/dbapi/driver/odbc/unix_odbc/sqlucode.h [new file with mode: 0644]
c++/include/dbapi/driver/public.hpp [new file with mode: 0644]
c++/include/dbapi/driver/types.hpp [new file with mode: 0644]
c++/include/dbapi/driver/util/blobstore.hpp [new file with mode: 0644]
c++/include/dbapi/driver/util/numeric_convert.hpp [new file with mode: 0644]
c++/include/dbapi/driver/util/parameters.hpp [new file with mode: 0644]
c++/include/dbapi/driver/util/pointer_pot.hpp [new file with mode: 0644]
c++/include/dbapi/driver_mgr.hpp [new file with mode: 0644]
c++/include/dbapi/error_codes.hpp [new file with mode: 0644]
c++/include/dbapi/variant.hpp [new file with mode: 0644]
c++/include/html/commentdiag.hpp [new file with mode: 0644]
c++/include/html/components.hpp [new file with mode: 0644]
c++/include/html/components.inl [new file with mode: 0644]
c++/include/html/error_codes.hpp [new file with mode: 0644]
c++/include/html/factory.hpp [new file with mode: 0644]
c++/include/html/html.hpp [new file with mode: 0644]
c++/include/html/html.inl [new file with mode: 0644]
c++/include/html/html_exception.hpp [new file with mode: 0644]
c++/include/html/htmlhelper.hpp [new file with mode: 0644]
c++/include/html/indentstream.hpp [new file with mode: 0644]
c++/include/html/node.hpp [new file with mode: 0644]
c++/include/html/node.inl [new file with mode: 0644]
c++/include/html/nodemap.hpp [new file with mode: 0644]
c++/include/html/page.hpp [new file with mode: 0644]
c++/include/html/pager.hpp [new file with mode: 0644]
c++/include/html/selection.hpp [new file with mode: 0644]
c++/include/html/writer_htmlenc.hpp [new file with mode: 0644]
c++/include/ncbi_pch.hpp [new file with mode: 0644]
c++/include/ncbi_source_ver.h [new file with mode: 0644]
c++/include/ncbiconf.h [new file with mode: 0644]
c++/include/objects/biblio/Affil.hpp [new file with mode: 0644]
c++/include/objects/biblio/Auth_list.hpp [new file with mode: 0644]
c++/include/objects/biblio/Author.hpp [new file with mode: 0644]
c++/include/objects/biblio/Cit_art.hpp [new file with mode: 0644]
c++/include/objects/biblio/Cit_book.hpp [new file with mode: 0644]
c++/include/objects/biblio/Cit_gen.hpp [new file with mode: 0644]
c++/include/objects/biblio/Cit_jour.hpp [new file with mode: 0644]
c++/include/objects/biblio/Cit_let.hpp [new file with mode: 0644]
c++/include/objects/biblio/Cit_pat.hpp [new file with mode: 0644]
c++/include/objects/biblio/Cit_proc.hpp [new file with mode: 0644]
c++/include/objects/biblio/Cit_sub.hpp [new file with mode: 0644]
c++/include/objects/biblio/Id_pat.hpp [new file with mode: 0644]
c++/include/objects/biblio/Title.hpp [new file with mode: 0644]
c++/include/objects/biblio/biblio_macros.hpp [new file with mode: 0644]
c++/include/objects/biblio/citation_base.hpp [new file with mode: 0644]
c++/include/objects/biotree/BioTreeContainer.hpp [new file with mode: 0644]
c++/include/objects/biotree/DistanceMatrix.hpp [new file with mode: 0644]
c++/include/objects/blast/.cvsignore.extra [new file with mode: 0644]
c++/include/objects/blast/Blast4_database.hpp [new file with mode: 0644]
c++/include/objects/blast/Blast4_parameters.hpp [new file with mode: 0644]
c++/include/objects/blast/Blast4_queries.hpp [new file with mode: 0644]
c++/include/objects/blast/Blast4_range.hpp [new file with mode: 0644]
c++/include/objects/blast/names.hpp [new file with mode: 0644]
c++/include/objects/blastdb/Blast_def_line.hpp [new file with mode: 0644]
c++/include/objects/blastdb/Blast_def_line_set.hpp [new file with mode: 0644]
c++/include/objects/blastdb/defline_extra.hpp [new file with mode: 0644]
c++/include/objects/cdd/Cdd.hpp [new file with mode: 0644]
c++/include/objects/entrez2/.cvsignore.extra [new file with mode: 0644]
c++/include/objects/entrez2/Entrez2_docsum.hpp [new file with mode: 0644]
c++/include/objects/entrez2/Entrez2_id_list.hpp [new file with mode: 0644]
c++/include/objects/entrez2/entrez2_client.hpp [new file with mode: 0644]
c++/include/objects/entrezgene/Gene_commentary.hpp [new file with mode: 0644]
c++/include/objects/gbproj/AbstractProjectItem.hpp [new file with mode: 0755]
c++/include/objects/gbproj/FolderInfo.hpp [new file with mode: 0755]
c++/include/objects/gbproj/GBProject_ver2.hpp [new file with mode: 0755]
c++/include/objects/gbproj/ProjectDescr.hpp [new file with mode: 0755]
c++/include/objects/gbproj/ProjectFolder.hpp [new file with mode: 0755]
c++/include/objects/gbproj/ProjectItem.hpp [new file with mode: 0755]
c++/include/objects/gbproj/gbproj_export.h [new file with mode: 0755]
c++/include/objects/gbproj/igbproject.hpp [new file with mode: 0755]
c++/include/objects/general/Date.hpp [new file with mode: 0644]
c++/include/objects/general/Date_std.hpp [new file with mode: 0644]
c++/include/objects/general/Dbtag.hpp [new file with mode: 0644]
c++/include/objects/general/Int_fuzz.hpp [new file with mode: 0644]
c++/include/objects/general/Name_std.hpp [new file with mode: 0644]
c++/include/objects/general/Object_id.hpp [new file with mode: 0644]
c++/include/objects/general/Person_id.hpp [new file with mode: 0644]
c++/include/objects/general/User_field.hpp [new file with mode: 0644]
c++/include/objects/general/User_object.hpp [new file with mode: 0644]
c++/include/objects/general/general_exception.hpp [new file with mode: 0644]
c++/include/objects/general/general_macros.hpp [new file with mode: 0644]
c++/include/objects/general/uoconv.hpp [new file with mode: 0644]
c++/include/objects/genomecoll/.cvsignore.extra [new file with mode: 0644]
c++/include/objects/genomecoll/GCClient_GetAssemblyReques.hpp [new file with mode: 0644]
c++/include/objects/genomecoll/GC_Assembly.hpp [new file with mode: 0644]
c++/include/objects/genomecoll/GC_AssemblySet.hpp [new file with mode: 0644]
c++/include/objects/genomecoll/GC_AssemblyUnit.hpp [new file with mode: 0644]
c++/include/objects/genomecoll/GC_Replicon.hpp [new file with mode: 0644]
c++/include/objects/genomecoll/GC_SeqIdAlias.hpp [new file with mode: 0644]
c++/include/objects/genomecoll/GC_Sequence.hpp [new file with mode: 0644]
c++/include/objects/genomecoll/genomic_collections_cli.hpp [new file with mode: 0644]
c++/include/objects/homologene/HG_Entry.hpp [new file with mode: 0644]
c++/include/objects/homologene/HG_Gene.hpp [new file with mode: 0644]
c++/include/objects/id1/.cvsignore.extra [new file with mode: 0644]
c++/include/objects/id1/ID1server_back.hpp [new file with mode: 0644]
c++/include/objects/id1/id1_client.hpp [new file with mode: 0644]
c++/include/objects/macro/Constraint_choice.hpp [new file with mode: 0644]
c++/include/objects/macro/Constraint_choice_set.hpp [new file with mode: 0644]
c++/include/objects/macro/Feat_qual_choice.hpp [new file with mode: 0644]
c++/include/objects/macro/Feature_field.hpp [new file with mode: 0644]
c++/include/objects/macro/Field_constraint.hpp [new file with mode: 0644]
c++/include/objects/macro/Field_type.hpp [new file with mode: 0644]
c++/include/objects/macro/Location_constraint.hpp [new file with mode: 0644]
c++/include/objects/macro/Location_pos_constraint.hpp [new file with mode: 0644]
c++/include/objects/macro/Molinfo_field.hpp [new file with mode: 0644]
c++/include/objects/macro/Replace_func.hpp [new file with mode: 0644]
c++/include/objects/macro/Replace_rule.hpp [new file with mode: 0644]
c++/include/objects/macro/Rna_feat_type.hpp [new file with mode: 0644]
c++/include/objects/macro/Rna_qual.hpp [new file with mode: 0644]
c++/include/objects/macro/Search_func.hpp [new file with mode: 0644]
c++/include/objects/macro/Simple_replace.hpp [new file with mode: 0644]
c++/include/objects/macro/Source_qual_choice.hpp [new file with mode: 0644]
c++/include/objects/macro/String_constraint.hpp [new file with mode: 0644]
c++/include/objects/macro/Suspect_rule.hpp [new file with mode: 0644]
c++/include/objects/macro/Suspect_rule_set.hpp [new file with mode: 0644]
c++/include/objects/macro/Word_substitution.hpp [new file with mode: 0644]
c++/include/objects/medline/Medline_entry.hpp [new file with mode: 0644]
c++/include/objects/misc/error_codes.hpp [new file with mode: 0644]
c++/include/objects/misc/sequence_macros.hpp [new file with mode: 0644]
c++/include/objects/misc/sequence_util_macros.hpp [new file with mode: 0644]
c++/include/objects/mla/.cvsignore.extra [new file with mode: 0644]
c++/include/objects/mla/Error_val.hpp [new file with mode: 0644]
c++/include/objects/mla/mla_client.hpp [new file with mode: 0644]
c++/include/objects/mmdb1/Biostruc.hpp [new file with mode: 0644]
c++/include/objects/ncbimime/Ncbi_mime_asn1.hpp [new file with mode: 0644]
c++/include/objects/omssa/MSBioseqSet.hpp [new file with mode: 0644]
c++/include/objects/omssa/MSEnzymes.hpp [new file with mode: 0644]
c++/include/objects/omssa/MSHits.hpp [new file with mode: 0644]
c++/include/objects/omssa/MSIonType.hpp [new file with mode: 0644]
c++/include/objects/omssa/MSMod.hpp [new file with mode: 0644]
c++/include/objects/omssa/MSModSpecSet.hpp [new file with mode: 0644]
c++/include/objects/omssa/MSRequest.hpp [new file with mode: 0644]
c++/include/objects/omssa/MSResponse.hpp [new file with mode: 0644]
c++/include/objects/omssa/MSSearch.hpp [new file with mode: 0644]
c++/include/objects/omssa/MSSearchSettings.hpp [new file with mode: 0644]
c++/include/objects/omssa/MSSearchType.hpp [new file with mode: 0644]
c++/include/objects/pub/Pub.hpp [new file with mode: 0644]
c++/include/objects/pub/Pub_equiv.hpp [new file with mode: 0644]
c++/include/objects/pub/Pub_set.hpp [new file with mode: 0644]
c++/include/objects/pub/pub_macros.hpp [new file with mode: 0644]
c++/include/objects/remap/.cvsignore.extra [new file with mode: 0644]
c++/include/objects/remap/remap_client.hpp [new file with mode: 0644]
c++/include/objects/scoremat/FormatRpsDbParameters.hpp [new file with mode: 0644]
c++/include/objects/scoremat/Pssm.hpp [new file with mode: 0644]
c++/include/objects/scoremat/PssmWithParameters.hpp [new file with mode: 0644]
c++/include/objects/seq/Bioseq.hpp [new file with mode: 0644]
c++/include/objects/seq/Delta_ext.hpp [new file with mode: 0644]
c++/include/objects/seq/Linkage_evidence.hpp [new file with mode: 0644]
c++/include/objects/seq/MolInfo.hpp [new file with mode: 0644]
c++/include/objects/seq/Pubdesc.hpp [new file with mode: 0644]
c++/include/objects/seq/Seq_annot.hpp [new file with mode: 0644]
c++/include/objects/seq/Seq_data.hpp [new file with mode: 0644]
c++/include/objects/seq/Seq_descr.hpp [new file with mode: 0644]
c++/include/objects/seq/Seq_gap.hpp [new file with mode: 0644]
c++/include/objects/seq/Seq_inst.hpp [new file with mode: 0644]
c++/include/objects/seq/Seq_literal.hpp [new file with mode: 0644]
c++/include/objects/seq/Seqdesc.hpp [new file with mode: 0644]
c++/include/objects/seq/annot_mapper_exception.hpp [new file with mode: 0644]
c++/include/objects/seq/seq_align_mapper_base.hpp [new file with mode: 0644]
c++/include/objects/seq/seq_id_handle.hpp [new file with mode: 0644]
c++/include/objects/seq/seq_id_mapper.hpp [new file with mode: 0644]
c++/include/objects/seq/seq_loc_from_string.hpp [new file with mode: 0644]
c++/include/objects/seq/seq_loc_mapper_base.hpp [new file with mode: 0644]
c++/include/objects/seq/seq_loc_reverse_complementer.hpp [new file with mode: 0644]
c++/include/objects/seq/seq_macros.hpp [new file with mode: 0644]
c++/include/objects/seq/seqlocinfo.hpp [new file with mode: 0644]
c++/include/objects/seq/seqport_util.hpp [new file with mode: 0644]
c++/include/objects/seq/sofa_map.hpp [new file with mode: 0644]
c++/include/objects/seq/sofa_type.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Dense_diag.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Dense_seg.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Product_pos.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Prot_pos.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Score.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Seq_align.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Seq_align_set.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Sparse_align.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Sparse_seg.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Spliced_exon.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Spliced_seg.hpp [new file with mode: 0644]
c++/include/objects/seqalign/Std_seg.hpp [new file with mode: 0644]
c++/include/objects/seqalign/seqalign_exception.hpp [new file with mode: 0644]
c++/include/objects/seqalign/seqalign_macros.hpp [new file with mode: 0644]
c++/include/objects/seqblock/GB_block.hpp [new file with mode: 0644]
c++/include/objects/seqblock/seqblock_macros.hpp [new file with mode: 0644]
c++/include/objects/seqedit/SeqEdit_Cmd.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/BioSource.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/Gb_qual.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/Gene_ref.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/Genetic_code.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/Genetic_code_table.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/ISeq_feat.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/Imp_feat.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/OrgMod.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/OrgName.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/Org_ref.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/PCRPrimerSeq.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/Prot_ref.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/RNA_gen.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/RNA_ref.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/SeqFeatData.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/Seq_feat.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/SubSource.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/VariantProperties.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/Variation_ref.hpp [new file with mode: 0644]
c++/include/objects/seqfeat/seqfeat_macros.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Na_strand.hpp [new file with mode: 0644]
c++/include/objects/seqloc/PDB_seq_id.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Packed_seqint.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Packed_seqpnt.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Patent_seq_id.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Seq_bond.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Seq_id.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Seq_interval.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Seq_loc.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Seq_loc_equiv.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Seq_loc_mix.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Seq_point.hpp [new file with mode: 0644]
c++/include/objects/seqloc/Textseq_id.hpp [new file with mode: 0644]
c++/include/objects/seqloc/seqloc_macros.hpp [new file with mode: 0644]
c++/include/objects/seqres/Seq_graph.hpp [new file with mode: 0644]
c++/include/objects/seqset/Bioseq_set.hpp [new file with mode: 0644]
c++/include/objects/seqset/Seq_entry.hpp [new file with mode: 0644]
c++/include/objects/seqset/gb_release_file.hpp [new file with mode: 0644]
c++/include/objects/seqset/seqset_exception.hpp [new file with mode: 0644]
c++/include/objects/seqset/seqset_macros.hpp [new file with mode: 0644]
c++/include/objects/seqtable/BVector_data.hpp [new file with mode: 0644]
c++/include/objects/seqtable/Scaled_int_multi_data.hpp [new file with mode: 0644]
c++/include/objects/seqtable/Scaled_real_multi_data.hpp [new file with mode: 0644]
c++/include/objects/seqtable/SeqTable_column.hpp [new file with mode: 0644]
c++/include/objects/seqtable/SeqTable_column_info.hpp [new file with mode: 0644]
c++/include/objects/seqtable/SeqTable_multi_data.hpp [new file with mode: 0644]
c++/include/objects/seqtable/SeqTable_sparse_index.hpp [new file with mode: 0644]
c++/include/objects/seqtable/Seq_table.hpp [new file with mode: 0644]
c++/include/objects/seqtable/impl/delta_cache.hpp [new file with mode: 0644]
c++/include/objects/seqtable/seq_table_exception.hpp [new file with mode: 0644]
c++/include/objects/submit/Seq_submit.hpp [new file with mode: 0644]
c++/include/objects/submit/submit_macros.hpp [new file with mode: 0644]
c++/include/objects/taxon1/Taxon1_error.hpp [new file with mode: 0644]
c++/include/objects/taxon1/taxon1.hpp [new file with mode: 0644]
c++/include/objects/taxon3/T3Data.hpp [new file with mode: 0644]
c++/include/objects/taxon3/T3Error.hpp [new file with mode: 0644]
c++/include/objects/taxon3/taxon3.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/TMgr_AnnotCounts.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/TMgr_ClientInfo.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/TMgr_DTrackId.hpp [new file with mode: 0755]
c++/include/objects/trackmgr/TMgr_DisplayTrackRequest.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/TMgr_IdentityId.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/TMgr_ItemResolverRequest.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/TMgr_LengthStats.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/TMgr_Message.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/TMgr_PositionStats.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/TMgr_Request.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/blast_client.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/createusertrack_client.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/displaytrack_client.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/gridrpcclient.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/item_resolver_client.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/removeusertrack_client.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/switch_context_client.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/track_attrvalue_client.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/trackmgr_client.hpp [new file with mode: 0644]
c++/include/objects/trackmgr/trackmgr_export.h [new file with mode: 0644]
c++/include/objects/valerr/ValidErrItem.hpp [new file with mode: 0644]
c++/include/objects/valerr/ValidError.hpp [new file with mode: 0644]
c++/include/objects/valid/Comment_rule.hpp [new file with mode: 0644]
c++/include/objects/valid/Comment_set.hpp [new file with mode: 0644]
c++/include/objects/valid/Dependent_field_rule.hpp [new file with mode: 0644]
c++/include/objects/valid/Field_rule.hpp [new file with mode: 0644]
c++/include/objects/variation/Variation.hpp [new file with mode: 0644]
c++/include/objmgr/align_ci.hpp [new file with mode: 0644]
c++/include/objmgr/annot_ci.hpp [new file with mode: 0644]
c++/include/objmgr/annot_name.hpp [new file with mode: 0644]
c++/include/objmgr/annot_selector.hpp [new file with mode: 0644]
c++/include/objmgr/annot_type_selector.hpp [new file with mode: 0644]
c++/include/objmgr/annot_types_ci.hpp [new file with mode: 0644]
c++/include/objmgr/bio_object_id.hpp [new file with mode: 0644]
c++/include/objmgr/bioseq_ci.hpp [new file with mode: 0644]
c++/include/objmgr/bioseq_handle.hpp [new file with mode: 0644]
c++/include/objmgr/bioseq_set_handle.hpp [new file with mode: 0644]
c++/include/objmgr/blob_id.hpp [new file with mode: 0644]
c++/include/objmgr/data_loader.hpp [new file with mode: 0644]
c++/include/objmgr/data_loader_factory.hpp [new file with mode: 0644]
c++/include/objmgr/edit_saver.hpp [new file with mode: 0644]
c++/include/objmgr/edits_db_engine.hpp [new file with mode: 0644]
c++/include/objmgr/edits_db_saver.hpp [new file with mode: 0644]
c++/include/objmgr/error_codes.hpp [new file with mode: 0644]
c++/include/objmgr/feat_ci.hpp [new file with mode: 0644]
c++/include/objmgr/gc_assembly_parser.hpp [new file with mode: 0644]
c++/include/objmgr/graph_ci.hpp [new file with mode: 0644]
c++/include/objmgr/impl/annot_collector.hpp [new file with mode: 0644]
c++/include/objmgr/impl/annot_finder.hpp [new file with mode: 0644]
c++/include/objmgr/impl/annot_object.hpp [new file with mode: 0644]
c++/include/objmgr/impl/annot_object_index.hpp [new file with mode: 0644]
c++/include/objmgr/impl/annot_type_index.hpp [new file with mode: 0644]
c++/include/objmgr/impl/bioseq_base_info.hpp [new file with mode: 0644]
c++/include/objmgr/impl/bioseq_edit_commands.hpp [new file with mode: 0644]
c++/include/objmgr/impl/bioseq_info.hpp [new file with mode: 0644]
c++/include/objmgr/impl/bioseq_set_edit_commands.hpp [new file with mode: 0644]
c++/include/objmgr/impl/bioseq_set_info.hpp [new file with mode: 0644]
c++/include/objmgr/impl/data_source.hpp [new file with mode: 0644]
c++/include/objmgr/impl/edit_commands_impl.hpp [new file with mode: 0644]
c++/include/objmgr/impl/handle_range.hpp [new file with mode: 0644]
c++/include/objmgr/impl/handle_range_map.hpp [new file with mode: 0644]
c++/include/objmgr/impl/heap_scope.hpp [new file with mode: 0644]
c++/include/objmgr/impl/mutex_pool.hpp [new file with mode: 0644]
c++/include/objmgr/impl/prefetch_impl.hpp [new file with mode: 0644]
c++/include/objmgr/impl/prefetch_manager_impl.hpp [new file with mode: 0644]
c++/include/objmgr/impl/priority.hpp [new file with mode: 0644]
c++/include/objmgr/impl/scope_impl.hpp [new file with mode: 0644]
c++/include/objmgr/impl/scope_info.hpp [new file with mode: 0644]
c++/include/objmgr/impl/scope_transaction_impl.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_align_mapper.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_annot_edit_commands.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_annot_info.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_entry_edit_commands.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_entry_info.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_loc_cvt.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_table_info.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_table_setter.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_table_setters.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_vector_cvt.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_vector_cvt_gcc_i386.hpp [new file with mode: 0644]
c++/include/objmgr/impl/seq_vector_cvt_gen.hpp [new file with mode: 0644]
c++/include/objmgr/impl/snp_annot_info.hpp [new file with mode: 0644]
c++/include/objmgr/impl/snp_info.hpp [new file with mode: 0644]
c++/include/objmgr/impl/synonyms.hpp [new file with mode: 0644]
c++/include/objmgr/impl/tse_assigner.hpp [new file with mode: 0644]
c++/include/objmgr/impl/tse_chunk_info.hpp [new file with mode: 0644]
c++/include/objmgr/impl/tse_info.hpp [new file with mode: 0644]
c++/include/objmgr/impl/tse_info_object.hpp [new file with mode: 0644]
c++/include/objmgr/impl/tse_loadlock.hpp [new file with mode: 0644]
c++/include/objmgr/impl/tse_lock.hpp [new file with mode: 0644]
c++/include/objmgr/impl/tse_scope_lock.hpp [new file with mode: 0644]
c++/include/objmgr/impl/tse_split_info.hpp [new file with mode: 0644]
c++/include/objmgr/mapped_feat.hpp [new file with mode: 0644]
c++/include/objmgr/object_manager.hpp [new file with mode: 0644]
c++/include/objmgr/objmgr_exception.hpp [new file with mode: 0644]
c++/include/objmgr/objmgr_version.hpp [new file with mode: 0644]
c++/include/objmgr/prefetch.hpp [new file with mode: 0644]
c++/include/objmgr/prefetch_actions.hpp [new file with mode: 0644]
c++/include/objmgr/prefetch_manager.hpp [new file with mode: 0644]
c++/include/objmgr/scope.hpp [new file with mode: 0644]
c++/include/objmgr/scope_transaction.hpp [new file with mode: 0644]
c++/include/objmgr/seq_align_handle.hpp [new file with mode: 0644]
c++/include/objmgr/seq_annot_ci.hpp [new file with mode: 0644]
c++/include/objmgr/seq_annot_handle.hpp [new file with mode: 0644]
c++/include/objmgr/seq_descr_ci.hpp [new file with mode: 0644]
c++/include/objmgr/seq_entry_ci.hpp [new file with mode: 0644]
c++/include/objmgr/seq_entry_handle.hpp [new file with mode: 0644]
c++/include/objmgr/seq_feat_handle.hpp [new file with mode: 0644]
c++/include/objmgr/seq_graph_handle.hpp [new file with mode: 0644]
c++/include/objmgr/seq_loc_mapper.hpp [new file with mode: 0644]
c++/include/objmgr/seq_map.hpp [new file with mode: 0644]
c++/include/objmgr/seq_map_ci.hpp [new file with mode: 0644]
c++/include/objmgr/seq_map_switch.hpp [new file with mode: 0644]
c++/include/objmgr/seq_table_ci.hpp [new file with mode: 0644]
c++/include/objmgr/seq_vector.hpp [new file with mode: 0644]
c++/include/objmgr/seq_vector_ci.hpp [new file with mode: 0644]
c++/include/objmgr/seqdesc_ci.hpp [new file with mode: 0644]
c++/include/objmgr/split/annot_piece.hpp [new file with mode: 0644]
c++/include/objmgr/split/asn_sizer.hpp [new file with mode: 0644]
c++/include/objmgr/split/blob_splitter.hpp [new file with mode: 0644]
c++/include/objmgr/split/blob_splitter_impl.hpp [new file with mode: 0644]
c++/include/objmgr/split/blob_splitter_params.hpp [new file with mode: 0644]
c++/include/objmgr/split/chunk_info.hpp [new file with mode: 0644]
c++/include/objmgr/split/id2_compress.hpp [new file with mode: 0644]
c++/include/objmgr/split/id_range.hpp [new file with mode: 0644]
c++/include/objmgr/split/object_splitinfo.hpp [new file with mode: 0644]
c++/include/objmgr/split/place_id.hpp [new file with mode: 0644]
c++/include/objmgr/split/size.hpp [new file with mode: 0644]
c++/include/objmgr/split/split_blob.hpp [new file with mode: 0644]
c++/include/objmgr/split/split_exceptions.hpp [new file with mode: 0644]
c++/include/objmgr/table_field.hpp [new file with mode: 0644]
c++/include/objmgr/tse_handle.hpp [new file with mode: 0644]
c++/include/objmgr/unsupp_editsaver.hpp [new file with mode: 0644]
c++/include/objmgr/util/create_defline.hpp [new file with mode: 0644]
c++/include/objmgr/util/feature.hpp [new file with mode: 0644]
c++/include/objmgr/util/obj_sniff.hpp [new file with mode: 0644]
c++/include/objmgr/util/seq_align_util.hpp [new file with mode: 0644]
c++/include/objmgr/util/seq_loc_util.hpp [new file with mode: 0644]
c++/include/objmgr/util/sequence.hpp [new file with mode: 0644]
c++/include/objmgr/util/weight.hpp [new file with mode: 0644]
c++/include/objtools/align_format/align_format_util.hpp [new file with mode: 0644]
c++/include/objtools/align_format/aln_printer.hpp [new file with mode: 0644]
c++/include/objtools/align_format/format_flags.hpp [new file with mode: 0644]
c++/include/objtools/align_format/ilinkoutdb.hpp [new file with mode: 0644]
c++/include/objtools/align_format/seqalignfilter.hpp [new file with mode: 0644]
c++/include/objtools/align_format/showalign.hpp [new file with mode: 0644]
c++/include/objtools/align_format/showdefline.hpp [new file with mode: 0644]
c++/include/objtools/align_format/tabular.hpp [new file with mode: 0644]
c++/include/objtools/align_format/vectorscreen.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_asn_reader.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_builders.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_container.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_converters.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_explorer.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_generators.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_rng_coll_oper.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_seqid.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_serial.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_stats.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_tests.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/aln_user_options.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alndiag.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alnexception.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alnmap.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alnmatch.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alnmerger.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alnmix.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alnpos_ci.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alnsegments.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alnseq.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alntext.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alnvec.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/alnvec_iterator.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/pairwise_aln.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/score_builder_base.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/seqid_comp.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/seqids_extractor.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/sparse_aln.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/sparse_ci.hpp [new file with mode: 0644]
c++/include/objtools/alnmgr/task_progress.hpp [new file with mode: 0644]
c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp [new file with mode: 0644]
c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp [new file with mode: 0644]
c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp [new file with mode: 0644]
c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp [new file with mode: 0644]
c++/include/objtools/blast/blastdb_format/seq_writer.hpp [new file with mode: 0644]
c++/include/objtools/blast/gene_info_reader/file_utils.hpp [new file with mode: 0644]
c++/include/objtools/blast/gene_info_reader/gene_info.hpp [new file with mode: 0644]
c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/column_reader.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/impl/seqdbcol.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/seqdb.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/seqdbblob.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_writer/build_db.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_writer/multisource_util.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_writer/taxid_set.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_writer/writedb.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_writer/writedb_error.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_writer/writedb_files.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_writer/writedb_general.hpp [new file with mode: 0644]
c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp [new file with mode: 0644]
c++/include/objtools/blast/services/blast_services.hpp [new file with mode: 0644]
c++/include/objtools/cleanup/autogenerated_cleanup.hpp [new file with mode: 0755]
c++/include/objtools/cleanup/cleanup.hpp [new file with mode: 0644]
c++/include/objtools/cleanup/cleanup_change.hpp [new file with mode: 0644]
c++/include/objtools/cleanup/newcleanup.hpp [new file with mode: 0755]
c++/include/objtools/data_loaders/blastdb/bdbloader.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/blob_id.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/cache/reader_cache_entry.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/cache/reader_cache_params.h [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/cache/writer_cache_entry.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/gbloader.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/gbloader_params.h [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/gicache/reader_gicache.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/gicache/reader_gicache_entry.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/gicache/reader_gicache_params.h [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/id1/reader_id1_entry.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/id1/reader_id1_params.h [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/id2/reader_id2_entry.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/id2/reader_id2_params.h [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/cache_manager.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/gbload_util.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/incr_time.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/processor.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/processors.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/reader_service.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/request_result.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/split_parser.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/standalone_result.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/impl/statistics.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/reader.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/reader_interface.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/reader_params.h [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/reader_service_params.h [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/reader_snp.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/readers.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/readers/cache/reader_cache.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/readers/cache/writer_cache.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/readers/id1/reader_id1.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/readers/id2/reader_id2.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/readers/pubseqos/reader_pubseq.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/readers/pubseqos2/reader_pubseq2.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/seqref.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/writer.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/genbank/writer_interface.hpp [new file with mode: 0644]
c++/include/objtools/data_loaders/loaders.hpp [new file with mode: 0644]
c++/include/objtools/edit/apply_object.hpp [new file with mode: 0644]
c++/include/objtools/edit/autodef.hpp [new file with mode: 0644]
c++/include/objtools/edit/autodef_available_modifier.hpp [new file with mode: 0644]
c++/include/objtools/edit/autodef_feature_clause.hpp [new file with mode: 0644]
c++/include/objtools/edit/autodef_feature_clause_base.hpp [new file with mode: 0644]
c++/include/objtools/edit/autodef_mod_combo.hpp [new file with mode: 0644]
c++/include/objtools/edit/autodef_source_desc.hpp [new file with mode: 0644]
c++/include/objtools/edit/autodef_source_group.hpp [new file with mode: 0644]
c++/include/objtools/edit/capitalization_string.hpp [new file with mode: 0644]
c++/include/objtools/edit/cds_fix.hpp [new file with mode: 0644]
c++/include/objtools/edit/dblink_field.hpp [new file with mode: 0644]
c++/include/objtools/edit/edit_exception.hpp [new file with mode: 0644]
c++/include/objtools/edit/feattable_edit.hpp [new file with mode: 0644]
c++/include/objtools/edit/field_handler.hpp [new file with mode: 0644]
c++/include/objtools/edit/gaps_edit.hpp [new file with mode: 0644]
c++/include/objtools/edit/gb_block_field.hpp [new file with mode: 0644]
c++/include/objtools/edit/gene_utils.hpp [new file with mode: 0644]
c++/include/objtools/edit/link_cds_mrna.hpp [new file with mode: 0755]
c++/include/objtools/edit/loc_edit.hpp [new file with mode: 0644]
c++/include/objtools/edit/mail_report.hpp [new file with mode: 0644]
c++/include/objtools/edit/promote.hpp [new file with mode: 0644]
c++/include/objtools/edit/remote_updater.hpp [new file with mode: 0755]
c++/include/objtools/edit/rna_edit.hpp [new file with mode: 0644]
c++/include/objtools/edit/seq_entry_edit.hpp [new file with mode: 0644]
c++/include/objtools/edit/seqid_guesser.hpp [new file with mode: 0644]
c++/include/objtools/edit/source_edit.hpp [new file with mode: 0644]
c++/include/objtools/edit/string_constraint.hpp [new file with mode: 0644]
c++/include/objtools/edit/struc_comm_field.hpp [new file with mode: 0644]
c++/include/objtools/edit/text_desc_field.hpp [new file with mode: 0644]
c++/include/objtools/error_codes.hpp [new file with mode: 0644]
c++/include/objtools/format/cigar_formatter.hpp [new file with mode: 0644]
c++/include/objtools/format/context.hpp [new file with mode: 0644]
c++/include/objtools/format/embl_formatter.hpp [new file with mode: 0644]
c++/include/objtools/format/embl_gather.hpp [new file with mode: 0644]
c++/include/objtools/format/feature_gather.hpp [new file with mode: 0644]
c++/include/objtools/format/flat_expt.hpp [new file with mode: 0644]
c++/include/objtools/format/flat_file_config.hpp [new file with mode: 0644]
c++/include/objtools/format/flat_file_generator.hpp [new file with mode: 0644]
c++/include/objtools/format/format_item_ostream.hpp [new file with mode: 0644]
c++/include/objtools/format/formatter.hpp [new file with mode: 0644]
c++/include/objtools/format/ftable_formatter.hpp [new file with mode: 0644]
c++/include/objtools/format/ftable_gather.hpp [new file with mode: 0644]
c++/include/objtools/format/gather_items.hpp [new file with mode: 0644]
c++/include/objtools/format/gather_iter.hpp [new file with mode: 0644]
c++/include/objtools/format/gbseq_formatter.hpp [new file with mode: 0644]
c++/include/objtools/format/genbank_formatter.hpp [new file with mode: 0644]
c++/include/objtools/format/genbank_gather.hpp [new file with mode: 0644]
c++/include/objtools/format/gff3_formatter.hpp [new file with mode: 0644]
c++/include/objtools/format/gff_formatter.hpp [new file with mode: 0644]
c++/include/objtools/format/gff_gather.hpp [new file with mode: 0644]
c++/include/objtools/format/item_formatter.hpp [new file with mode: 0644]
c++/include/objtools/format/item_ostream.hpp [new file with mode: 0644]
c++/include/objtools/format/items/accession_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/alignment_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/basecount_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/comment_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/contig_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/ctrl_items.hpp [new file with mode: 0644]
c++/include/objtools/format/items/date_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/dbsource_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/defline_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/feature_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/flat_qual_slots.hpp [new file with mode: 0644]
c++/include/objtools/format/items/flat_seqloc.hpp [new file with mode: 0644]
c++/include/objtools/format/items/gap_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/gene_finder.hpp [new file with mode: 0644]
c++/include/objtools/format/items/genome_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/genome_project_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/html_anchor_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/item_base.hpp [new file with mode: 0644]
c++/include/objtools/format/items/keywords_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/locus_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/origin_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/primary_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/qualifiers.hpp [new file with mode: 0644]
c++/include/objtools/format/items/reference_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/segment_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/sequence_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/source_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/tsa_item.hpp [new file with mode: 0644]
c++/include/objtools/format/items/version_item.hpp [new file with mode: 0644]
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